Sphaerochaeta pleomorpha: SpiGrapes_1074
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Entry
SpiGrapes_1074 CDS
T01673
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sgp
Sphaerochaeta pleomorpha
Pathway
sgp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SpiGrapes_1074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgp03019
]
SpiGrapes_1074
03009 Ribosome biogenesis [BR:
sgp03009
]
SpiGrapes_1074
Enzymes [BR:
sgp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SpiGrapes_1074
Messenger RNA biogenesis [BR:
sgp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SpiGrapes_1074
Ribosome biogenesis [BR:
sgp03009
]
Prokaryotic type
rRNA helicases
SpiGrapes_1074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AEV28897
UniProt:
G8QS36
LinkDB
All DBs
Position
1177090..1179003
Genome browser
AA seq
637 aa
AA seq
DB search
MPDLTHFAELGLSAQTIAALEAKGFEEPTKIQAACIPLLLKDQVDVIGQAQTGTGKTAAF
GLPILEIVDPNAYQVQALILAPTRELAVQNAEEINSLKGNRRLEIAAVYGGASMDLQLRK
LRRGVHVVVGTPGRILDHLRRGSLNLEHLKFVVLDEADEMLDMGFVDDIEEVLKQTPVEK
RMLCFSATMPAPIKRLAEKFMRNPEFVQIQQDINTSNLTDQIYFEVREGDKFEALTRIID
MEEDFYGLIFCRTKVQCDEIGQKLNARGYDAEPLHGDLSQKQRELILQKMKNRTISIVVA
TDVAARGIDISDLTHVINYSLPEDPESYIHRVGRTGRAGKKGVAITFVGPREFNRFAFIK
KVSKNDIRRESVPEASEIIGIKRARILSKLTEILAEEHDPNDTFLPLAQQLLEDNTPEQV
VLTLLNHFYKDELDEAKYKNIGQGGGDREQRRDSRYSEEAGFTRLFIARGRKDGLDKRRL
IDYLIEQVGARDQDLQDVSVRDDFSFVSAPLQVAERILQTFSDRSSEGRPLITRAKPDNP
NGKNLSGRTRYDDRPARSGRGGYEDRPRGGGGRRSRDDYQPYGRDTHGGEDERSRSDEGS
ERPYRSEGSSRPHGMYSGSGKGKAFPKSRSNSNGKKW
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgccagatttaacccactttgcggaactaggattgtccgcacaaacaatcgcagcactt
gaggcgaaagggttcgaggaacctacaaaaatacaggccgcctgtattccccttcttctc
aaagaccaagtagatgttatcggccaagcacaaacaggaacaggcaaaactgccgccttt
ggccttcccattctagaaatcgttgaccccaatgcataccaggtacaagctttgattctc
gctccgacaagggaacttgccgttcagaacgccgaagaaatcaattccctaaaaggaaat
agacgccttgaaattgccgcagtatatggcggtgcttccatggatttgcagcttcgcaaa
ttacgcaggggtgtacatgttgtcgtaggaacccccggtcgtatccttgaccatttgaga
aggggttctctcaatctcgagcacttgaagtttgtagttctcgatgaagccgatgaaatg
ttagacatgggctttgtcgatgatatcgaggaagtgctcaagcagaccccggtagaaaag
cgaatgctttgtttctctgccacaatgcctgcccctatcaagcgccttgcagaaaagttc
atgagaaatcctgaatttgtgcagatccagcaggatataaacacgagcaaccttaccgac
cagatttatttcgaagtccgtgaaggtgacaagtttgaggctttgaccagaatcatagac
atggaagaggatttctatggccttatcttctgccggacaaaagtccagtgtgatgaaatt
ggacagaagctcaatgcccgtggttatgatgcagaacctttacatggagacctttcacag
aaacaacgtgaattgattctccaaaagatgaagaatcgtacgattagcatcgtagtagct
accgatgtagccgcacgaggaatcgacatctccgatttgacccatgtaatcaactactca
ttgcctgaagatccggaatcatacatccaccgtgttggacgtaccggtcgtgcaggtaaa
aagggtgtagccattacctttgtcggcccacgtgagttcaatcgtttcgcctttatcaaa
aaagtatccaagaacgatatccgtagggaatcggttcccgaggcttccgagattatcgga
atcaaacgtgccaggattttaagcaaattgactgaaatccttgctgaggaacacgatccg
aacgataccttccttccccttgcccaacagcttctggaagacaatacccccgaacaggtt
gttttgactttgctcaaccacttctacaaagatgaacttgacgaagccaagtacaagaac
atcggacaaggtggcggagatcgcgaacagagacgagattcccgttattccgaagaagcc
ggttttacccgcttgttcattgcacggggacgcaaagatggcttggacaaacgcagactt
attgattacctcatcgagcaggtaggtgcacgcgaccaggacctccaggatgtatcggtt
cgtgatgacttctcttttgtctctgctcccttgcaggtggctgagagaatcctccagact
ttctctgaccggagttctgagggaaggccccttattaccagggctaaacctgataatcca
aacgggaaaaacctttctggaagaaccaggtatgatgatcgtccggccagaagtggacgc
ggtggttatgaagaccgtccccgtggtggtggaggcagacgttcccgtgacgactaccag
ccctacggccgggacacccatggcggagaagacgaacgaagccgaagcgatgaaggctct
gaacgcccgtatcgcagtgaaggctccagccgtccccatggaatgtactcaggatcagga
aaggggaaagcattccccaagtcacggtccaacagtaatggcaagaaatggtaa
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