Sphaerochaeta pleomorpha: SpiGrapes_2129
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Entry
SpiGrapes_2129 CDS
T01673
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sgp
Sphaerochaeta pleomorpha
Pathway
sgp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sgp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SpiGrapes_2129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgp03021
]
SpiGrapes_2129
03400 DNA repair and recombination proteins [BR:
sgp03400
]
SpiGrapes_2129
Enzymes [BR:
sgp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SpiGrapes_2129
Transcription machinery [BR:
sgp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SpiGrapes_2129
DNA repair and recombination proteins [BR:
sgp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SpiGrapes_2129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AEV29905
UniProt:
G8QRI3
LinkDB
All DBs
Position
2336901..2341184
Genome browser
AA seq
1427 aa
AA seq
DB search
MKEIQDFDSIMIKLASPEQIKDWSYGEVKKPETINYRTLRPERDGLFCEKIFGTTKEWEC
YCGKFKSIRYKGVICDRCGVEVTNTKVRRERMGHITLAAPVSHIWYYRSVPSRMSMLLDI
SRNSLQSILYYEKYVVINAGDTNLKLKQLLSEEEYWLARDQYGDSFEAGMGAEAVRKLLT
NLDLEELSRELREQMRQKEDKADKRLLKRIEVCENFRDSGNRPEWMILTVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLDRLVKLNAPDIIIRNEKRMLQEAVDALFDNSK
RKRVVKGASNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELRMHQCGLPSK
MALELYKPFIMKKLVQDGVVYNIKKAKSLVEEETDAVWSILDDVVKEHPVLLNRAPTLHR
LGIQAFDPVLVDGKAIKLHPLVCHAYNADFDGDQMAVHVPLTHAAQLECWTLMLSVTNLL
DPANGKPIVYPSQDMVLGINYLTREMKGAKGTGRFYDSIGELEMAIEADALSYNALIRYR
FADGTKVETTPGRVIFNSVLPEGVPFQNACLGDKELKKLIGDTLKTRENSLAVEMLDSIK
DIGYKYATIFGATIGLSDMIVPDAKKGMVDKANVEQQKILDQYRQGHITQDERYNRVIEV
WTQTNDELTDELMNELKKSQNGFNPLFLMADSGARGSKTQIRQLGGMRGLMAKPSGDVIE
FPIKSNFKEGLSIIEFFISTNGARKGLSDTALKTAEAGYLTRRLVDISQDVVVNEEDCHT
INGIWRSAIKDGDEIVESLADRIVGRCPVEDVLHPFTHEVIAEANIEISEPVAKLIEDAG
VEKILLRTVLTCEAKHGVCQKCYGRNLATNSSVVIGEAVGIIAAQSIGQPGTQLTMRTFH
VGGTASTSSEESKLTFNYPVVIGSISGTRVVRVSDGLDVFTRKGHIEYFRVNAEIIKGSY
DELLVSDGSVVGKGTPIYKKDGETILSLENGSVKFLDGRLLLVGHSTSQVVKTGSELLVK
SGQFVDTQTPIVTFDPFSEPVIAEEGGYTNFVDIKLGTTLIEEVNEETGNIEKKITEHSL
ESLQPRIEITSQEHGKGSTLAVYLLPGASYLQVEDNVKVEKGHILAKLLKEGVKTKDITG
GLPRVGELFEARRPRNNTILAQVSGVVSFGPVVKAKRSVIVRDAFGHEYKHMVPMGKNLL
VRDGDPVEAAEPLCDGAIDPHDILDILGENALQSFLVDEVQEVYRMQGVDINDKHLGVIV
RQMLRKVEIVHVGDTNLIHGQQVDKFRFFEENERVVTEGGEPAVARPLLLGITRASLSID
SFISAASFQETTKVLTNAAIAGSKDELRGLKENVIIGHLIPAGTGMKKYRDVKLKDEELL
ALQQKVDAVKESRRQEMIDDDDFDVEELGDMKSVGDAVDVDDSYDGE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaattcaggatttcgatagcattatgataaagctggcttcgccggagcagatc
aaggattggtcgtacggcgaggtgaagaagcccgagacgattaattaccgcacgcttcgg
cccgagagggatggcttgttttgtgagaagattttcggaactaccaaggaatgggaatgc
tattgcggaaagtttaaatctatccgctataagggtgtcatttgtgaccggtgtggtgtt
gaagtaacgaacaccaaggtcagacgtgaacgcatgggacatattacccttgcagcccct
gtttcccatatttggtattaccgttctgtaccctcgcggatgagcatgttgctggatatt
tcccgcaactcgttgcagagcattctttattatgagaaatatgtagttatcaatgcaggc
gataccaatcttaagctaaagcagctcctcagtgaagaggagtactggcttgcacgcgat
cagtatggtgattcgtttgaagcagggatgggtgccgaggcggttcgcaaacttttgacg
aaccttgaccttgaggaactttcccgtgagcttcgcgagcagatgcgccagaaagaagat
aaggcagacaagcgtttgcttaagagaattgaggtttgtgagaacttccgtgatagcggc
aaccgccctgaatggatgatccttaccgtaattccggtcatcccaccggatttgcggcca
atggttcagctagatggcggacgtttcgcaaccagtgacctcaatgacttgtaccgaagg
gtcatcaacaggaacaacaggcttgatcgtttggtcaagctcaatgcccctgacatcatc
atccgtaatgaaaaaaggatgttgcaggaagctgttgacgcattgtttgataactcaaag
agaaaacgtgtggtcaagggtgcttcaaacaggcctctgaagagtctttccgatatgctt
aaaggtaagcaaggccgtttcaggcagaacttgcttggaaagcgtgtcgactattcaggg
cgttccgttattgttgttggtcctgaattgagaatgcatcagtgtggtcttccttcaaag
atggctttggaactctataagcctttcattatgaagaagctcgtacaagatggcgttgta
tataacatcaaaaaggcaaagagccttgttgaagaagagaccgatgccgtatggtctatc
cttgatgatgtagttaaggagcaccctgttctgctgaaccgtgcgcctacgttgcaccgc
cttggaatccaggctttcgatccggttctcgttgacgggaaggctatcaaattgcatccc
ctcgtatgtcatgcctacaatgctgacttcgacggtgaccagatggctgttcacgtaccg
ctaacccatgcggcccagctggaatgctggaccttgatgctctctgtaacgaaccttctc
gaccctgctaacggtaaaccgattgtgtatccttcccaggacatggttcttggtatcaac
tacctgaccagggaaatgaagggtgctaaaggtaccgggcgtttctatgacagtattgga
gagcttgaaatggctattgaggccgatgctctctcgtataatgccttgattcgttatcgg
ttcgccgatggcacaaaggttgagactactcccggacgagtaatctttaactctgttctt
cctgaaggtgttcctttccaaaacgcctgccttggagacaaagagcttaagaagctgatc
ggggatacgttgaaaacaagggaaaactcccttgctgtcgagatgctcgattcaatcaag
gatattggctataaatatgctaccatctttggtgctaccatcggtttgtccgacatgatt
gtccctgatgcaaagaagggcatggttgacaaagccaatgtcgagcagcaaaagattctt
gatcagtatcgtcaggggcatattacccaggatgaacgttataaccgtgttatcgaggtt
tggacccagacgaacgatgagctcaccgatgagttgatgaatgaactgaagaagagccag
aacggcttcaatccattgttcctcatggctgactccggtgcccgtggatcgaagacacag
atcaggcagcttggtggtatgcgtggattgatggcaaagccatcaggcgacgtcatcgag
ttccctatcaagtccaactttaaggaaggactttcgattatcgagttcttcatttccacg
aacggtgcccgtaagggtctttccgatactgctttgaagaccgctgaggctggttacctg
acccgtcgtttggttgatatcagccaggacgttgtcgtcaatgaagaggattgtcatact
atcaatggtatctggcgttccgctatcaaggacggtgatgaaattgttgagtcccttgca
gaccgtattgttggtcgttgcccggtagaggatgtcttgcatccgtttacccatgaggta
attgccgaagcgaatattgagatttctgaacctgtggcaaaacttattgaagacgctggt
gttgagaagatcctgctcaggactgtattgacctgtgaggcaaaacatggtgtttgtcag
aaatgttatggtcgaaaccttgccaccaatagttctgtggttatcggagaggctgtcggt
atcatcgccgcccagtcaatcggtcagcccggaactcagcttacgatgcgtacgttccac
gttggtggtactgcttcgacgagttccgaggaaagcaagctgacgttcaactatccggtt
gttatcggttcgatttcaggaactagggttgttcgtgtttctgacggcttggatgtattc
acccgtaaggggcatatcgaatatttccgtgtcaatgcagaaattataaaaggatcctat
gatgaactgctcgtttctgacggctcggtagtgggaaaaggtactcctatctataaaaaa
gatggcgagaccatcctctcccttgaaaatggttctgtaaagttccttgacggcagactg
cttctggttggtcactctacctcgcaggttgttaagactggttcagaactcctggtgaaa
tcaggtcagtttgttgacacccagactcccattgtaacctttgaccccttcagtgagcct
gttattgctgaagaaggtggttatacgaatttcgtcgatatcaaattggggactacattg
attgaagaggtcaatgaggaaaccggtaatatcgagaagaagattactgagcatagcctt
gaatctctccagccccgcattgagatcacctcacaggagcatggaaagggtagcaccctt
gccgtgtatctgttacctggtgcttcctacttgcaggttgaggataacgttaaggttgaa
aagggacatatcctggcaaagcttttgaaagaaggtgttaaaaccaaggatattaccggt
ggtcttccccgagtcggggagttgttcgaggcccgtaggcccagaaacaataccattttg
gcccaagtatcaggtgttgtcagttttggtccagtcgtaaaggcaaagcgctcggttatc
gtaagggatgccttcggtcatgagtacaaacacatggtaccgatggggaaaaaccttctg
gttcgtgacggagaccccgttgaagcggctgaacccttgtgtgacggagcgattgatcca
catgatatccttgatatactcggtgaaaacgcattgcagtcattcttggtcgatgaagtc
caggaagtctaccggatgcagggtgtagatattaatgataagcacctcggtgttattgtc
aggcagatgttgcgtaaggttgagattgtccatgtaggcgataccaatcttatccacggg
cagcaggtagataagttccgtttctttgaagaaaacgaacgtgttgtaaccgaaggtggt
gaacccgctgtagcccgtcctctcctgcttggtattacccgtgcctcgttgagtatcgac
tcctttatctcggcagcctccttccaggagactaccaaggtcttgacaaatgcggcaata
gctggtagtaaagatgagttacgtggtttgaaagaaaacgtaattattggtcatctgatc
cctgctggtactggtatgaagaagtacagggatgtaaaattgaaggacgaagagcttctt
gcattgcaacaaaaggttgatgcagtgaaagaatcaaggcgtcaggaaatgattgatgac
gatgattttgacgttgaagaacttggtgatatgaaatccgtaggtgatgcggtggatgtg
gacgattcgtatgacggagaatag
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