Sphaerochaeta pleomorpha: SpiGrapes_2161
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Entry
SpiGrapes_2161 CDS
T01673
Name
(GenBank) conserved hypothetical protein YmdA/YtgF
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sgp
Sphaerochaeta pleomorpha
Pathway
sgp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SpiGrapes_2161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgp03019
]
SpiGrapes_2161
Messenger RNA biogenesis [BR:
sgp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SpiGrapes_2161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
LapA_dom
dUTPase
Motif
Other DBs
NCBI-ProteinID:
AEV29937
UniProt:
G8QRL5
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All DBs
Position
2357533..2359065
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AA seq
510 aa
AA seq
DB search
MNVILIILLSCLFGIVLGWLCRWLYAKFKLTSVEQRAVRLNKEAIKEAEAKSKELLLETR
DQLLKEQQQQEREARERRIELQRSERRLLQKEENLEHKQTELDVIRKQLGDRDASLLKKE
QEISSKEGSLITELERIAGMTSEEAKTNIIEAMQNDAKRDGQLLINKIEQEAQLTADKKA
RDIVVTSIQRLATEVTSDVTISSVSLPSDEMKGRIIGREGRNIRTLETLTGVDVIIDDTP
EAVVISCFDPVRKEIARVSLERLVQDGRIHPARIEEVVNKVTKEIGRIIADEGEKVVFDL
GVHNMGQETIRALGRLYFRTSYGQNVLNHSKEVAILSGMIASEVGANAELAMRSGLLHDI
GKGIETESDANHAELGADMAKRLGEDPRVVNAILAHHSDVEPTTLEAVIVQIADAISAAR
PGARRETLDNYIKRLESLEQIAESFVGVDKAYAIQAGRELRILVNNDTVSDDGAKEIAKG
IASRIEAELRYPGRIKVTIIREMRVVEYAR
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttatactaattatcctccttagttgtttatttggtatcgtcttaggttggtta
tgccgttggctgtatgcgaaatttaagcttacctcggtcgaacagagagctgtcagactg
aacaaggaagcaataaaggaagcggaagcaaagagcaaggagcttttgcttgagactcgg
gatcagttgttgaaagagcaacaacagcaagaacgagaggctagggaaagacggattgaa
ttgcagcgttccgagaggagacttcttcagaaagaagagaatctggaacataagcaaact
gaattagatgttatcagaaagcaactaggagatagagacgcaagtcttttaaagaaggaa
caggaaatttcctctaaagagggaagcctgataactgaattggaacgtatcgcaggcatg
acttcggaagaggccaagaccaatatcattgaggctatgcaaaatgatgcgaaacgtgat
ggccagctcttgatcaataaaattgagcaagaagcacagcttactgctgacaagaaggca
cgcgatatcgttgtgacttccattcagcggcttgcaactgaagttaccagtgatgttact
atcagttcggtcagtcttccgagtgatgagatgaaaggtcggattattggacgtgaggga
agaaatatccgcacgttggagacgctgacaggtgtcgatgtcattattgacgatactcct
gaagctgttgtcatttcctgtttcgatcctgtacgaaaagaaattgcaagggtctcgctt
gaaagactggtccaagacggccggatccatcctgcacggattgaagaggtcgtcaataaa
gtcacgaaggaaatcggaaggattatcgccgatgaaggcgaaaaagttgttttcgatctc
ggggtccataacatgggacaggagactattcgtgccttgggtcgtctttatttccgaaca
agttatgggcagaatgttcttaaccactccaaagaagtggcgattttgtctggtatgatt
gcaagtgaagttggagcaaatgctgaattagctatgcgctcaggacttttgcatgatatc
ggcaaaggtatcgaaaccgaaagtgatgcaaaccatgcagaactgggtgcagatatggca
aaacgcctcggtgaggatcctcgagttgttaatgcaattctggcccaccatagcgatgtc
gaaccaacgactttggaagctgttatcgtccagattgctgacgccatcagtgctgcccgc
cctggcgccagacgtgagactttggataattatatcaagcgtcttgagtcactcgagcag
attgccgaaagctttgtcggtgtagacaaagcctatgctatccaagctggacgtgaatta
aggattcttgttaacaatgataccgtttctgatgatggtgccaaagagatagcgaaggga
atcgcaagccgcattgaagcagaattgcgatatccaggaagaatcaaggtgaccattatc
cgtgagatgcgggtagtagaatacgctaggtag
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