Sphaerochaeta pleomorpha: SpiGrapes_2187
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Entry
SpiGrapes_2187 CDS
T01673
Name
(GenBank) bacterial nucleoid DNA-binding protein
KO
K04764
integration host factor subunit alpha
Organism
sgp
Sphaerochaeta pleomorpha
Brite
KEGG Orthology (KO) [BR:
sgp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgp03032
]
SpiGrapes_2187
03036 Chromosome and associated proteins [BR:
sgp03036
]
SpiGrapes_2187
03400 DNA repair and recombination proteins [BR:
sgp03400
]
SpiGrapes_2187
DNA replication proteins [BR:
sgp03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
SpiGrapes_2187
Chromosome and associated proteins [BR:
sgp03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
SpiGrapes_2187
DNA repair and recombination proteins [BR:
sgp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
SpiGrapes_2187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
Hexokinase_1
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
AEV29963
UniProt:
G8QRW5
LinkDB
All DBs
Position
2387598..2387918
Genome browser
AA seq
106 aa
AA seq
DB search
MAEPKLTKAAIIESLHEKHGLNRSDIHMIIDEFFEEVKEGLKHDQVIELRGFGTFEVRTR
KGREKARNPKTGAIVAVETHGVAIFRPGKELKDYVWDLRDNKPIND
NT seq
321 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacctaagttgactaaagcagctataattgaaagtcttcatgaaaagcatggg
cttaataggtccgatatccatatgattattgatgagttctttgaagaagtaaaagaagga
ctgaagcatgaccaagtaatcgaattacgtggtttcggaacgtttgaagtaagaacccgt
aagggccgcgagaaagctcgtaatccaaagactggagcaattgttgccgtggaaacccat
ggagttgcaattttccgtccgggaaaagagctcaaggattatgtctgggacttgcgtgat
aacaagccaatcaatgactaa
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