Sphaerochaeta pleomorpha: SpiGrapes_2190
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Entry
SpiGrapes_2190 CDS
T01673
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sgp
Sphaerochaeta pleomorpha
Pathway
sgp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SpiGrapes_2190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgp03021
]
SpiGrapes_2190
03019 Messenger RNA biogenesis [BR:
sgp03019
]
SpiGrapes_2190
Transcription machinery [BR:
sgp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SpiGrapes_2190
Messenger RNA biogenesis [BR:
sgp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SpiGrapes_2190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
ATPase_2
AAA
AAA_22
Rho_N
OB_RNB
NACHT
Spore_III_AA
AAA_25
S1CSD-TOTE-2
ResIII
AT_hook
Motif
Other DBs
NCBI-ProteinID:
AEV29966
UniProt:
G8QRW8
LinkDB
All DBs
Position
2391034..2392989
Genome browser
AA seq
651 aa
AA seq
DB search
MSSEEIMNEQNDVMPGSEQNSEKKSVRRITRKKGGLVVKASESTPAVEEKVASPEPASPV
SEQKKRRGRPKKASVAKTEEPREERIEKSEEKKQEKKHDRNVQIEQPQLDFVATESTQQN
SPASPASPTPTTRSAQPSSESDRDYQQTPSQNTGSQNQQSNPNQYRKNTAQYSTRNGSRP
QQNRQHPRGNYQKNQPYQQNRGMRQNQQDDSLNDLNIEDHPEAPILNVNDYASLPIEDLR
EVGIERGMNPETILDLRKQEILAEILRIHSAKGGVIVGMGTLEILPDGFGFLRSSNNSYL
SGLEDIYVSPAQVKSLSLKTGDVVYGQVRTPRDSERFFAILRILKVNDDEPVVAKMRAPF
DSLTPLFPDERLRLETTEEDMSTRIIDMFCPIGKGQRSLIVAPPRTGKTVLMQKIANSIS
TNYPEVVLMVLLVDERPEEVTDMRRHVKGEVIASTFDEQASRHVQVAEMVIEKAKRLVEH
KKDVVILLDSITRLARAYNQTVPASGKILSGGVDSNALHKPKRFFGAARNIEFGGSLTII
ATGLIETGSRMDEVIFEEFKGTGNNEIILDRRLADKRQFPAINIKKSGTRREDLLLPADE
AARIWLCRNAVNDMDDQEMTPFLIDKIRKTKDNEAFLRSINTGIPTNSAGY
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgaagaaataatgaatgagcaaaatgacgtaatgccgggttctgaacagaat
tctgaaaagaaatcggtacgacgtattacacgaaagaaaggtgggctcgtggtcaaagcc
tccgaatcgactccagcagtggaagaaaaggtagcttctcccgaacctgcctcccctgtt
tccgaacagaaaaaacgtaggggccgtccaaagaaagcttctgtagccaaaacagaagag
cctagagaagaacggatagaaaaaagcgaagagaagaaacaagaaaaaaaacatgataga
aatgtacagattgagcaaccccagcttgattttgttgcaacggagagtacacagcaaaac
tcacctgcttctcctgcttcaccgactccaactactcgttcagcgcaaccttcttctgag
agcgacagggattaccaacagactcctagccagaacacaggcagtcaaaaccaacaaagc
aatccaaaccaatatagaaagaatactgcacaatatagcacccgaaatggtagcaggccc
cagcagaatcgacagcatccccggggaaattaccagaaaaaccaaccgtatcagcaaaat
cgcgggatgcggcaaaaccaacaggatgattcactcaatgatttgaacattgaagaccat
ccggaagcacccatcctcaatgtgaatgattacgcctcgcttccgattgaggatttgcga
gaagtaggaattgagagagggatgaatcctgaaaccattctggaccttcgaaaacaggag
attcttgctgagatcctgaggattcacagtgcaaagggtggtgttatcgttgggatgggc
acccttgaaatccttcctgacgggtttggctttcttcggtcctcgaataacagttatctg
tccggtcttgaagatatctatgtttcccctgcccaggtcaaatccctcagtctcaaaaca
ggggatgttgtatatggccaagtcaggactccccgtgacagcgagcgcttttttgcgata
ctgagaatcctgaaagtaaatgacgatgagccggtagttgcaaaaatgcgggctcctttc
gatagccttaccccattgttccctgacgaacggcttcgcctggagaccacagaggaagac
atgtccaccaggattatcgatatgttctgcccaatcggaaaaggacagagatctttgatt
gttgctcctccccgcaccggtaaaacagtccttatgcagaaaattgcaaactccatcagc
accaactacccagaggttgtcctcatggtcctgctcgttgatgagcgacctgaggaagtt
accgatatgcgtcgccatgtcaaaggcgaggttattgcctctaccttcgatgaacaggct
tcacggcatgtccaggtggcagaaatggtgatcgaaaaggcaaagcgcttggttgagcac
aaaaaagatgtagtgatactgcttgattcaattacccgtttggcccgtgcgtataaccaa
acggttcccgcaagcggtaaaatcctcagcggtggtgttgactcaaatgccttgcacaag
ccaaaaaggttttttggtgctgcaagaaatatcgagtttggaggaagcctaaccattatt
gctaccggtttgatcgagaccgggtcgagaatggatgaggtcatctttgaagagttcaaa
ggcaccggtaacaatgagattatccttgaccgccgtttagctgacaaacgacagttcccg
gcaataaacatcaagaaaagtgggacgagacgtgaggatctgttgcttcctgctgatgaa
gctgccaggatttggctttgcagaaatgctgtcaatgacatggatgatcaggagatgact
cctttcctcattgacaaaattcggaagacaaaggataatgaggcgttcttacgttcgata
aatacaggtattcctacgaattctgcaggttattag
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