Sphaerochaeta pleomorpha: SpiGrapes_2306
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Entry
SpiGrapes_2306 CDS
T01673
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sgp
Sphaerochaeta pleomorpha
Pathway
sgp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SpiGrapes_2306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgp03019
]
SpiGrapes_2306
03016 Transfer RNA biogenesis [BR:
sgp03016
]
SpiGrapes_2306
Enzymes [BR:
sgp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SpiGrapes_2306
Messenger RNA biogenesis [BR:
sgp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SpiGrapes_2306
Transfer RNA biogenesis [BR:
sgp03016
]
Prokaryotic type
tRNA degradation factors
SpiGrapes_2306
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AEV30082
UniProt:
G8QSF2
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All DBs
Position
2528498..2529976
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AA seq
492 aa
AA seq
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MNVSDDRKDRILLEKIAHQAMLDRGLAPDFSKSVLAELEAIKGPATYDSVPEMIDLRDRL
WCSLDNDDSKDLDQLTAVETSDKGFAKILIAIADVDAVVKKQSAIDLHAQQNTTSVYTVP
QVFPMLPEKLSTDITSLNFDRDRLSLVVEIDLADDGTVLSSSIYRAMVRNKARLSYTSVA
AWLDGTGAMPVEIASVKGMEESLRLQDSIAQKMKLLRHQHGALVLETIEAKPVFSGDTLM
NLVPDTRNRAKEIVEDFMIAANGVTSRFLTAKKFPSIRRIVTEPKRWDRIVKIAADKGTV
LPKKPDSLALENFLIASQRAEPLRFPDLSLSVIKLLGSGEYIVQMPDQTGKGHFGLAVKN
YTHSTAPNRRFPDLITQRLLKSAIAGIPSPYSVEELTSLAQHCNEAENAANKVERQVVKS
AAAILLESRIGEQFDAIVTGAAAKGTWVRIFDPPLEGRLESGFEGLDIGDRLRVQLVSTD
VNRGFIDFKRVR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtttctgatgataggaaggaccgaatcctcttggaaaaaattgcacatcaggca
atgcttgaccgtgggcttgccccagatttctccaaatcggttcttgccgaacttgaggcg
atcaagggtcctgcaacatatgattctgtaccggaaatgattgatttacgtgacaggctc
tggtgctccctcgataatgatgattctaaagaccttgatcagttgactgcggttgaaacc
tctgacaaggggtttgccaagattttgatagcgatagcagatgtcgatgcggtggtaaaa
aaacagtcagctatcgatttgcatgcacagcagaatactacctcagtctatacggtacca
caggtattccctatgctacccgagaagttatctacagatattacctcactcaattttgac
agagaccgtctttcgcttgtcgttgaaatagaccttgccgatgatggcactgtgctcagt
tcttcaatctatagggctatggtacgcaacaaggcaaggctttcttatactagtgtcgca
gcctggctggatgggacaggagctatgccagtagaaattgcctcagtcaaagggatggag
gagagtctgcgtttgcaggatagtattgcccagaaaatgaaattgctccgtcatcaacac
ggggccctcgtccttgagacgatcgaggccaaaccggttttctctggtgataccctgatg
aatctggtacctgatacacggaatcgtgcaaaagaaattgtcgaggattttatgattgcg
gcaaacggggttacttcacgattccttaccgctaaaaagttcccttcgatcaggcggata
gttacagaacccaaaagatgggacaggattgtaaaaattgccgctgacaaaggtactgtc
ctgcctaagaaaccagattctttggctctggagaatttcctcattgcatcccagagggcg
gaacccctacggtttcctgatttgtctctcagtgtaataaagttactgggttccggagag
tatatcgtccagatgcctgatcaaacgggaaaggggcattttggactggcagtaaagaat
tatacccattcgactgcacccaatcgtcgttttcctgacttgatcacccagcgtctgtta
aaatctgcaattgctggcattccctctccctattcggttgaagagcttacttctcttgcc
caacattgtaacgaggccgagaatgccgcaaataaagtagagcggcaggttgtaaaatct
gctgcggcaattctccttgaatcaaggataggagagcagttcgatgctatcgtaacagga
gcggccgccaagggtacgtgggtgcgtatttttgatcctccgctggaaggacgcctcgaa
agtggttttgaaggcttggatattggtgacagacttcgtgttcagctggtgagtaccgat
gtgaaccggggatttatcgatttcaagcgggtgagataa
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