Sphaerochaeta pleomorpha: SpiGrapes_2328
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Entry
SpiGrapes_2328 CDS
T01673
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sgp
Sphaerochaeta pleomorpha
Brite
KEGG Orthology (KO) [BR:
sgp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgp03016
]
SpiGrapes_2328
Enzymes [BR:
sgp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SpiGrapes_2328
Transfer RNA biogenesis [BR:
sgp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SpiGrapes_2328
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DNA_polI_exo1
SieB
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AEV30103
UniProt:
G8QSS1
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All DBs
Position
2552480..2553367
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AA seq
295 aa
AA seq
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MYTYLVIESDLQLDEMVAQWKAQGTNVLAMDFEGEFNLHIYGEHLCLIQLYDGTSFYLID
PFKVQPSSLKAFLQDAEIEKIMFDCASDSALVRKEFGILMQNIYDIRVPALALGYTGNLS
GLVSLYLGEQEEKTNGSKKKNQMTNWLARPLKNDQVQYALSDVAHLFSLKDILQAKIAEK
GLSAQVNATMLNIAKPKGPDKPGWTKFACWKFLNREEKAYLKHFFIARDTLAKKYNVPAV
RILDKHVLVDMAKNLPADANSFHSFCYRCGMHCEQELVELLLVGKSAALAEIKGA
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgtacacctatttggtaattgaatcggatttgcaacttgatgaaatggttgcgcaatgg
aaggcacaggggaccaacgtccttgccatggactttgaaggagaattcaaccttcatata
tatggggaacatctttgccttatccaactgtatgacggtacttcattttacctcattgac
ccatttaaagttcagccctcttctctgaaggcgtttctacaagatgcagagatagagaaa
attatgtttgactgtgccagtgactctgccctagtccgtaaggaattcgggatccttatg
caaaacatctacgatatcagggttcctgcccttgccttgggctatacgggaaatctttca
gggttggtgagcctctaccttggagaacaagaagaaaagacaaacgggagcaaaaagaaa
aaccagatgacaaactggttggcaaggcctctgaagaatgatcaggtccaatatgcttta
tcggatgtagcccatttgttttccctcaaggatattctccaggcgaaaattgccgagaaa
ggtctttctgcccaggtcaatgcaaccatgctgaatattgccaagccgaaaggcccggac
aaaccggggtggaccaaatttgcctgttggaaatttctcaaccgggaagagaaagcttat
ctcaagcatttcttcattgcccgagatacgttggcgaaaaaatataatgtccctgcagta
agaatcctcgataaacatgtcctggtagatatggccaagaacctacctgccgacgccaat
tcctttcactctttttgttatcggtgcggtatgcactgtgaacaggaattggtcgaattg
cttcttgtggggaaatctgcggcccttgcagagatcaaaggtgcctga
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