Spiroplasma gladiatoris: SGLAD_v1c08320
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Entry
SGLAD_v1c08320 CDS
T06685
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sgq
Spiroplasma gladiatoris
Pathway
sgq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGLAD_v1c08320 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgq03019
]
SGLAD_v1c08320 (rnj)
Messenger RNA biogenesis [BR:
sgq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SGLAD_v1c08320 (rnj)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Mur_ligase_C
DUF4453
Motif
Other DBs
NCBI-ProteinID:
QBQ08031
UniProt:
A0A4P7AIL8
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All DBs
Position
963768..965555
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AA seq
595 aa
AA seq
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MDTKNNKSITIVADLEAKIEIKKVKSNQNPIKKKFDQAPHPTKVFALGGLEEVGKNTYCV
EYDDEIIMLDAGVKFPDATQLGVSAVIPDYSYLAENNKKIKGLFITHGHEDHIGGIPYLL
QQVDIPVIYAPELAAALIRDRIKEYKLTNKTVVKEYVEDDVYQTKHMTIQFAAVNHSIPD
AFGIHVTTPNGAIFSTGDYKFDWTPLGHSANIQRLSKWGNEGIELLMSDSTNAEIEGYTL
GERKVIQNIDTHFLKAKGRIIIASFASNVHRIQHIIELANKYGRRIVVFGRSLERIIKII
RQMGHLNINDKMFIKQNEIDNYPKNQIMILCTGSQGEPMAALSRIARQEHPAVKLIPGDT
IIMSSSPIPGNRADVENVVNKLTKIGATVIENNGEQKIHTSGHASQEEQKLLFTLLKPKY
FMPMHGEFRMLKVHGETAVKVNVKPQNVFVIANGDQILMQNGVAELGKRIPAEAIFIDGK
DMTGKASNIIRERNILSRDGLMAVIISIDSQANKLLAPPRIVSRGSFYVRDSGNVIAESI
NIVTNAVLGVLNSPKPTFGAIKSAVKETLSPFIFRYKRRNPLIIPVILNKKMDIK
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggacaccaaaaataataagagcataactattgttgctgatttagaagcaaaaatagaa
ataaaaaaggttaaaagtaatcaaaatccaattaaaaagaagtttgatcaagcaccccac
cctactaaagtatttgctttgggtggtttagaagaagttggaaaaaatacatattgtgta
gaatatgatgatgaaatcattatgcttgatgctggagttaaatttcctgacgcaacccaa
ttgggagtgagtgcagttattccagattatagttatttagcagaaaataataaaaaaatt
aaaggtttgtttattacccatggacatgaagatcacattggaggaattccttacttgtta
caacaagttgatattccagttatttatgcgccagaattagcagcagctttaattagagat
agaataaaagaatataaattgactaacaaaacagttgtaaaagaatatgtagaagatgat
gtttatcaaacaaagcacatgactattcaatttgcagcagtaaaccactcaattccagat
gcatttgggattcacgttactactccaaacggagcaattttttcaacaggagattacaaa
ttcgattgaactcctttggggcattctgcaaacattcaaagattgtctaaatgaggaaac
gaaggaattgaattgctaatgtctgattctactaatgcagaaattgaaggttatacatta
ggtgaacgaaaagttattcaaaacattgatacacattttttaaaagcaaaaggaagaatt
attattgcttcatttgcttcaaacgttcatagaattcaacatattattgaacttgcaaat
aaatacggaagaagaattgttgtatttggaagaagtttagaaagaattattaaaattatt
cgtcaaatgggacatttaaacattaatgataaaatgtttattaaacaaaacgaaattgat
aattatccaaaaaatcaaattatgattttgtgtacaggaagtcaaggagagccaatggct
gctttatctagaattgctagacaagaacatccagcagttaaattgattccaggagataca
attattatgtcttcttcaccaattccaggtaacagagcggatgttgaaaatgttgtaaat
aaacttacaaaaattggagcaactgtaatcgaaaataatggtgaacaaaaaattcatact
tcaggacacgctagtcaagaagaacaaaaattactatttactttattaaaaccaaaatac
tttatgccaatgcacggagagtttcggatgttaaaagttcacggtgaaacagctgtaaaa
gtaaatgtaaaacctcaaaatgtttttgtgattgcaaatggtgatcaaattttaatgcaa
aatggggttgctgaattaggcaaaagaattccagcagaagcgatctttattgatggaaaa
gatatgactggaaaagcaagtaatattattagagaaagaaatatattaagtcgtgatggg
ttaatggcagtaattatctctattgactcacaagcaaacaaattattagcacctccaaga
attgtttctagaggaagcttttatgtaagagatagtggaaatgtgattgcagaatcaatt
aatattgtcactaacgcggttttaggagttttaaactctccaaaacctacttttggtgcg
attaaatcagctgtaaaagaaactctatcgcctttcatatttagatataaaagaagaaat
ccattaattattccagtaattttaaataaaaaaatggatattaaatag
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