Streptomyces griseus: SGR_2179
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Entry
SGR_2179 CDS
T00691
Name
(GenBank) putative transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sgr
Streptomyces griseus
Pathway
sgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGR_2179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgr03021
]
SGR_2179
03019 Messenger RNA biogenesis [BR:
sgr03019
]
SGR_2179
Transcription machinery [BR:
sgr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SGR_2179
Messenger RNA biogenesis [BR:
sgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SGR_2179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
AAA_25
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAG19008
Kitasato:
SGR2179
UniProt:
B1W0B9
LinkDB
All DBs
Position
complement(2579118..2581163)
Genome browser
AA seq
681 aa
AA seq
DB search
MSDTTDLMGVTADKSVDSAAPAEGAATGTTARRRRSGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAGGGSAAPKASSKAAEAPAEAESKPKRRATSKARTGDEAAAAAA
EKDPAQQQIDIPGQPASDDQPAGERRRRRATAQAGSPDTKTEAKTEVKAKAEPQAEQKTE
ERGEPKGDAKAENAADAAEGRRGDRQGRGERGDRGERRERQRDRRGKGDDQGQQGGGGQR
SQRQGQGGGGQGQGGQNRDNGPQDDFDDEAGGRRGRRGRYRDRRGRRGRDDFASDVQVAD
DDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVRQPKDG
ERREKFNALVRLDSVNGMAPESGRGRPEFQKLTPLYPQDRLRLETDSNVLTTRIIDLVAP
IGKGQRGLIVAPPKTGKTMILQAIANAITVNSPECHLMVVLVDERPEEVTDMQRSVKGEV
ISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSG
GVDSTALYPPKRFFGAARNIEDGGSLTILATALVETGSRMDEVIFEEFKGTGNMELKLDR
KLSDKRIFPAVDVDASSTRKEEILLGTDELAVVWKLRRVLHALDQQQAIELLLDRMKKTQ
SNAEFLLQIQKTTPGSGNGND
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgtgactgccgacaagagcgtcgacagcgccgcg
cccgccgaaggtgctgccactggcaccaccgcacggcgccgccgctccggcaccggcctc
gagggcatggtcctggccgagctgcagcaggtcgcgtccggcctcggcatcaggggcacc
gcgcggatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggcgggtggcgga
tccgccgcccccaaggcctcctccaaggccgcagaggcccccgccgaggcggagagcaag
ccgaagcgccgcgcgacctcgaaggcgcgcaccggggacgaggccgccgctgccgcagcc
gagaaggacccggcccagcagcagatcgacatccccggtcagccggccagcgacgaccag
cccgcgggcgagcgtcgtcgccgtcgcgcgaccgcgcaggcgggcagccccgacaccaag
accgaggcgaagaccgaggtcaaggccaaggcggagccccaggccgagcagaagaccgag
gagcggggcgagccgaagggcgacgccaaggccgagaacgccgccgacgcggccgagggc
cgtcgtggcgaccgtcagggccgcggcgagcggggcgaccgcggtgagcgtcgcgagcgt
cagcgcgaccgccgcggcaagggcgacgaccagggccagcagggcggcggcgggcagcgc
tcgcagcgccagggccagggcggcggcggccagggacagggcggccagaaccgtgacaac
ggcccgcaggacgacttcgacgacgaggcgggcggccgtcgcggccgtcgcggacgttac
cgcgaccgccgtggccgtcgtggccgcgacgacttcgcgagcgacgtgcaggtggccgac
gacgacgtcctgatccccgtcgcgggcatcctggacatcctcgacaactacgcgttcatc
cggacctccggctacctgccgggcccgaacgacgtgtacgtctcgctcgcccaggtccgc
aagaacggcctgcgcaagggcgaccacgtcaccggtgcggtgcgccagcccaaggacggc
gagcggcgcgagaagttcaacgcgctggtccgcctcgactcggtcaacggcatggccccg
gagtccggccgcggccgccccgagttccagaagctgaccccgctctacccgcaggaccgg
ctccgcctggagaccgactccaacgtcctgacgacgcggatcatcgacctggtggccccg
atcggcaaggggcagcgcggcctcatcgtggccccgccgaagaccggtaagaccatgatc
ctgcaggccatcgccaacgcgatcacggtcaacagccccgagtgccacctgatggtcgtc
ctggtcgacgagcgtccggaagaggtcaccgacatgcagcggtcggtgaagggcgaggtc
atctcctcgaccttcgaccgtcccgccgaggaccacaccaccgtcgccgagctggccatc
gagcgcgccaagcgcctcgtcgagctgggccacgacgtggtcgtcctgctcgactcgatc
acccgtctgggccgcgcgtacaacctcgcggcgccggcctccggccgcatcctctccggt
ggtgtcgactcgaccgcgctctaccccccgaagcgcttcttcggcgccgcgcgcaacatc
gaggacggcggctcgctgaccatcctcgccaccgcgctcgtcgagaccggctcgcgcatg
gacgaggtgatcttcgaggagttcaagggcaccggcaacatggagctcaagctcgaccgg
aagctctcggacaagcgcatcttcccggcggtggacgtcgacgcgtcctccacccgcaag
gaggagatcctgctcggcaccgacgagctggcggtggtctggaagctgcgccgggtgctg
cacgcgctcgaccagcagcaggcgatcgaactcctcctggaccggatgaagaagacccag
tccaacgcggagttcctgctccagatccagaagacgacgccgggcagcggaaacggcaac
gactga
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