Streptomyces griseus: SGR_4185
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Entry
SGR_4185 CDS
T00691
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sgr
Streptomyces griseus
Brite
KEGG Orthology (KO) [BR:
sgr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgr03016
]
SGR_4185
Enzymes [BR:
sgr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SGR_4185
Transfer RNA biogenesis [BR:
sgr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SGR_4185
Prokaryotic type
tRNA splicing ligases
SGR_4185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAG21014
Kitasato:
SGR4185
UniProt:
B1VTC4
LinkDB
All DBs
Position
4892024..4893217
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AA seq
397 aa
AA seq
DB search
MSYVEVPGAKVPIRMWADPASVEDGAMQQLRNVSTLPWIKGLAVMPDVHFGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLSRLRSRIEQAIPVGRGMHGDAVDPG
KLHGFPTSGWDDFWGRFGGIADAVKFRQERATKQMGTLGSGNHMIEFCLDSEGAVWLMLH
SGSRNIGKELAEHHIGVAQKLPHNQSLVDRDLAVFISETPQMAAYRNDLYWAQEYAKYNR
AIMMALFKDVVRKEFKKAKPVFGQEISCHHNYVAEERYDGADLLVTRKGAIRAGSGEYGI
IPGSMGTSSYIVRGLGNEKAFNSASHGAGRRMSRNAAKRRFTVRDLEEQTRGVECRKDSG
VLDEIPAAYKPIEQVMEQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtagaggtgccgggagcgaaggttcccatccggatgtgggcggaccccgcg
tcggtcgaggacggggcgatgcagcagctgcgcaacgtctccacactgccgtggatcaag
ggtctcgccgtcatgccggacgtccacttcggcaagggggcgacggtcggttcggtgatc
gcgatgcagggcgcggtgtgcccggccgcggtcggcgtcgacatcggctgcgggatgtcc
gccgtcaggacgtccctcaccgcgaacgatctccccggcgacctgtcacgactgcgctcc
aggatcgagcaggccattccggtcggccggggcatgcacggtgacgccgtggacccgggg
aagctgcacgggttcccgacgtcggggtgggacgacttctgggggcggttcggggggatc
gccgacgcggtcaaattccgtcaggagcgcgccacgaaacagatgggaacgctcggctcg
ggaaatcacatgatcgagttctgtctggacagcgagggtgcggtgtggctgatgctgcac
tcgggctctcgcaacatcggaaaggagctcgccgagcaccacatcggcgtcgcccagaag
cttccgcacaatcagagtctcgtcgaccgagacctggccgtcttcatctcggagaccccg
cagatggccgcctaccggaacgatctgtactgggcgcaggagtacgccaagtacaaccgc
gcgatcatgatggcgcttttcaaggacgtggtccgcaaggagttcaagaaggcgaagccg
gtcttcgggcaggagatctcctgccaccacaattacgtggcggaggaacggtacgacgga
gcggacctgctggtcacccggaagggagcgatccgcgccggatccggtgagtacgggatc
attcccggctcgatgggcaccagttcgtacatcgtgcggggcctcggaaacgagaaggcg
ttcaactcggcctcccacggagccggtcgcaggatgagccggaacgcggccaagcgtcgc
ttcacggtgcgtgacctggaggagcagacgcggggtgtcgagtgccgcaaggactccggc
gtcctggacgagatcccggccgcgtacaagcctatcgagcaggtcatggagcagcagcgg
gacctggtcgaggtcgtcgcgaagctcaagcaggtggtgtgcgtgaagggctga
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