Streptomyces griseus: SGR_6729
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Entry
SGR_6729 CDS
T00691
Name
(GenBank) putative transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
sgr
Streptomyces griseus
Pathway
sgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGR_6729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgr03021
]
SGR_6729
03019 Messenger RNA biogenesis [BR:
sgr03019
]
SGR_6729
Transcription machinery [BR:
sgr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SGR_6729
Messenger RNA biogenesis [BR:
sgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SGR_6729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
AAA_22
ATPase_2
AAA
NACHT
Motif
Other DBs
NCBI-ProteinID:
BAG23558
Kitasato:
SGR6729
UniProt:
B1VMT3
LinkDB
All DBs
Position
complement(8042689..8043828)
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AA seq
379 aa
AA seq
DB search
MTTTLERPTAPEQRPVRVAGLLDPADDGHGMLRVRGGHPSPDDIQVSSALIRRLGLRKGD
AVEGGCDRPRVLASVDRVNGRDPEDLRGRARFRDLTPVHPRERLRLETPRGGPAPRIVDL
VSPVGKGQRGLIVAPPRTGKTVLLQQVAAAVATNHPEAHLMVVLLDERPEEVTDMRRSVR
GEVYASTFDRPAREHIALAELAVERGRRLVEQGRDVVILLDSLTRLCRAHNNAARAGGRT
LSGGVDAAALAGPKKLFGAARCAEEGGSLTILATALVETGSRADDFFFEELKGTGNMELR
LDRSAAEARIFPAVDVARSGTRREELLFGEGELAAVRALRRALGTRDGQGALQVLLDRVR
RTPDNAAFLRQVQPTVPGA
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccactctcgaacgccccaccgcccctgagcagcgccccgtccgggtcgccggc
ctcctcgaccccgccgacgacggccacggcatgctccgtgtccgcggcggccacccctcc
cccgacgacatccaggtgtcgtccgctctgatccgccgcctcgggctgcgcaagggcgat
gccgtcgagggcggctgcgaccggccgcgcgtcctggcctcggtcgaccgggtcaacgga
cgcgacccggaagacctgcggggccgtgcccgcttccgtgatctgacgcccgtccacccg
cgcgagcggctgcgcctggagacaccgcgcggcgggcccgcgccgcgcatcgtcgatctc
gtctcccccgtcggcaagggccagcgcggcctcatcgtcgcaccgccccgtacgggcaag
acggtgctgcttcagcaagtggccgccgccgtcgccaccaaccatcccgaggcgcacctg
atggtggtgctgctcgacgaacggcccgaggaggtcacggacatgcgccgctcggtacgc
ggcgaggtgtacgcgtcgaccttcgaccggcccgcgcgggagcacatcgccctggccgaa
ctcgccgtcgagcgtggccggcgcctcgtcgagcagggccgggacgtggtgatcctgctg
gactccctcacccgcctgtgccgggcccacaacaacgcggcccgcgcggggggccggacc
ctcagcggcggcgtcgacgcggcggccctggccggccccaagaagctgttcggggcggcc
cgttgcgccgaggagggcggttcgctcaccatcctggcgacggctctcgtggagacgggt
tcacgggccgacgacttcttcttcgaggagttgaagggcaccggcaacatggagctgcgc
ctggaccgctccgccgccgaagcgcggatcttccccgccgtcgatgtcgcccgctccggc
acccgtcgcgaggaactcctgttcggtgaaggggagttggcggcggtgagggccctgcgc
cgcgccctgggcacgcgggacggccaaggcgccctccaggtgctgctggacagggtccgg
cgcaccccggacaacgcggccttcctgcggcaggtgcagccgacggtgccgggcgcctga
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