Sporisorium graminicola: EX895_000540
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Entry
EX895_000540 CDS
T09331
Name
(RefSeq) hypothetical protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sgra
Sporisorium graminicola
Pathway
sgra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sgra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EX895_000540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sgra03041
]
EX895_000540
03009 Ribosome biogenesis [BR:
sgra03009
]
EX895_000540
Enzymes [BR:
sgra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EX895_000540
Spliceosome [BR:
sgra03041
]
Complex A
U1 snRNP components
U1 related factors
EX895_000540
Complex B
EX895_000540
Ribosome biogenesis [BR:
sgra03009
]
Eukaryotic type
Pre-60S particles
Helicases
EX895_000540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
40723435
NCBI-ProteinID:
XP_029742527
LinkDB
All DBs
Position
SGRAM_1:complement(join(1440747..1441066,1441157..1441177,1442846..1444181))
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AA seq
558 aa
AA seq
DB search
MSYGGYSSGSGRGGSYGGGRGGYGGGSSSYGNGGGSYGGGSSYGGGSSYGNGGGGYDGGY
GGGYGGGYGGSGDRMSNLGSNLGAVDWNSVDLVNFEKNFYVEDPRVTARSEAEVQQYRAS
KQMTIQGQNVPKPVTSFDEAGFPDYILSEIKKMGFSEPSSIQSQAWPMALSGRDLVAIAE
TGSGKTIGFALPAMVHINAQPLLKPGDGPIALILAPTRELANQIQVECNRFGGSSRLRTC
AVYGGVPKGPQIRDLQRGAEICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFE
PQIRKILQQIRPDRQTLMFSATWPKEVQRLAGDFLNNFAQVNIGSTELAANHNVKQIIEV
CTEFEKRGKLIGHLEAISAENGKVIIFTSTKRVADDLTKFLRQDGWPSLAIHGDKQQQER
DWVLAEFKSGRSPIMVATAVASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGT
AYTYFTPENSKSARELIGILREAKQEIPREIEEMGRFGGGGGGGRGFRGRGRGRGRGGFG
GGGRTGANSYSVGGNSRW
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacggcggatacagcagcggctccggtcgcggtggctcttacggcggtggtcgt
ggcggctacggcggtggctccagcagctacggcaacggtggcggcagctacggcggcggc
tcttcgtatggcggcggtagctcgtacggcaacggcggtggcggatacgacggcggatac
ggtggaggctacggaggtggctacggcggcagcggtgaccgcatgagcaaccttggcagc
aacctcggcgccgtcgactggaactcggtcgacctcgtcaacttcgagaagaacttttac
gtcgaggacccgcgtgtcaccgcccgcagcgaggccgaggtgcaacagtaccgcgcctcc
aagcagatgactatccaaggccagaacgtgcccaagcctgtcacctcgttcgacgaggct
ggtttccccgattacatcctctcggagatcaagaagatgggtttcagtgaaccttcgtcc
attcagtcccaggcctggcccatggccctcagcggtcgcgacctcgtcgccatcgccgag
accggttctggtaagaccatcggttttgccctgcccgccatggtccacatcaacgcccag
ccgctcctcaagcccggcgacggtcccatcgccctcatccttgctcccacccgtgagctt
gccaaccagatccaggtcgagtgcaaccgcttcggtggctccagccgcctccgcacctgc
gccgtctacggtggtgtccccaagggcccccagatccgcgacctccagcgtggtgccgag
atctgcatcgctacgcccggtcgtctgatcgacatggtggacgctggcaagaccaacctg
cgtcgtgtcacctacctcgtcatggacgaggccgatcgcatgctcgacatgggtttcgag
ccccaaatccgcaagatcctgcagcagatccgccctgaccgacagacgctcatgttctcg
gccacctggcccaaggaggtgcagcgtcttgccggcgacttcctcaacaactttgcgcag
gtcaacatcggctccaccgagctcgctgccaaccacaacgtcaagcagatcatcgaggtc
tgcaccgagttcgagaagaggggcaagctcatcggtcacctcgaggccatctctgctgag
aacggtaaagtgatcatcttcaccagcaccaagcgtgtcgccgacgacctcaccaaattc
ctccgtcaagacggctggccctcgctcgccatccacggtgacaagcagcaacaggagcgt
gactgggttctcgccgagttcaagtccggtcgaagccccatcatggttgcaaccgctgtc
gcatctcgcggtctcgacgtgaaggacatctcgtatgtcatcaactacgacttccctacc
aacacggaggactacgtgcaccagatcggccgtaccggtcgtgccggacgcactggtacc
gcctacacgtacttcactcccgagaactccaagtcggcgcgagagctgatcggcattctg
cgtgaggccaagcaggagatcccgcgtgagattgaggagatgggtcgcttcggcggtgga
ggcggcggcggccgtggcttccgcggccgaggccgtggtcgcggccgtggcggtttcggt
ggcggaggacgcacgggcgccaactcgtacagcgttggcggcaactcgaggtggtaa
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