Sporisorium graminicola: EX895_001312
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Entry
EX895_001312 CDS
T09331
Name
(RefSeq) hypothetical protein
KO
K12881
THO complex subunit 4
Organism
sgra
Sporisorium graminicola
Pathway
sgra03013
Nucleocytoplasmic transport
sgra03015
mRNA surveillance pathway
sgra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sgra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EX895_001312
09122 Translation
03013 Nucleocytoplasmic transport
EX895_001312
03015 mRNA surveillance pathway
EX895_001312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgra03019
]
EX895_001312
03041 Spliceosome [BR:
sgra03041
]
EX895_001312
Messenger RNA biogenesis [BR:
sgra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
EX895_001312
TREX complex
EX895_001312
Spliceosome [BR:
sgra03041
]
Complex C
Other components
EJC/TREX
EX895_001312
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
EX895_001312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
40724207
NCBI-ProteinID:
XP_029741512
UniProt:
A0A4U7KZ11
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Position
SGRAM_11:complement(join(19903..20186,20300..20453,20583..20839,21294..21309))
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AA seq
236 aa
AA seq
DB search
MNIDKPLDQIISDRPKKTGAGRNSQRGRRGGRSARPGAKAAAVGAGAQSAAVIAASNRNK
PPVVIPGRSGNTGSKIILSNLPLDVTEAQVKELFATTIGALRKVAMSYRANGQSTGVCTV
EFQRADDAGRAYTQYNNRLIDGKKPLKVEVVVDPSKVAAAPAAAAKGAKGAAGAGAKGKG
GRGAAGAAGAAGASSRGRGRARGAKREARPKKTVEDLDAEMEDYNKQASTDAAPQA
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atgaacattgacaagccccttgaccagatcatctccgatcgccccaagaagaccggcgcc
ggccgcaacagccagcgcggtcgtcgtgggggccgtagtgctcgacccggcgcaaaggcg
gcagctgtcggtgctggtgcccagagtgctgccgtcatcgccgcctcgaaccgcaacaag
ccccccgtcgtgatccccggccgtagcggcaacactggcagcaagattattctcagcaac
ttgcctctcgatgtcaccgaggcccaagtcaaggaactatttgccaccaccattggcgct
cttcgcaaggtggccatgagctaccgtgccaacggccagtccactggcgtctgcactgtc
gagttccagcgtgccgacgatgctggccgagcctacacccagtacaacaaccgattgatc
gatggaaagaagcctctcaaggtcgaagtcgtcgttgacccctccaaggtggctgctgcg
cccgctgctgcagccaagggcgccaagggtgctgccggtgccggtgccaagggcaaggga
ggtcgcggtgccgctggtgctgccggtgctgccggtgcttcgtcgcgcgggcgtggccgt
gcacgtggcgccaagcgcgaggcgcgccccaagaagacggtcgaggacctcgacgccgag
atggaggactacaacaagcaggcctccaccgacgctgctcctcaggcctaa
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