Sporisorium graminicola: EX895_001372
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Entry
EX895_001372 CDS
T09331
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sgra
Sporisorium graminicola
Pathway
sgra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sgra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EX895_001372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sgra03041
]
EX895_001372
Enzymes [BR:
sgra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EX895_001372
Spliceosome [BR:
sgra03041
]
Complex C
Other components
Step II factors
EX895_001372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
S1
DEAD
AAA_22
AAA_30
AAA_19
nSTAND3
ABC_tran
Microtub_bd
T2SSE
Flavi_DEAD
GIPC1_GH2
PhoH
TsaE
nSTAND_NTPase5
AAA_16
SRP54
NB-ARC
Ploopntkinase3
Motif
Other DBs
NCBI-GeneID:
40724267
NCBI-ProteinID:
XP_029741572
UniProt:
A0A4U7KZ62
LinkDB
All DBs
Position
SGRAM_11:complement(214542..218165)
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AA seq
1207 aa
AA seq
DB search
MASKTSDELYQLELLSLTGKIATELLNHTGINDRVLAEFILSLHDSTTSVADFKSKLSEV
GADFPDSFVTNLDRLILRLHPKHKKAAASSASSTNAKAGSSSPSAKGKEKASIEDEQRER
RARMFPGLAIKDQEWQPSQEKGRDAVDDFMKQFEDMAAAKSRSPANGRDSRIATESRSPP
PSSSSSRHTAKYDRDEASSSSRRGRDDRPPPHLSRPPPDDRPQLYKIYEGKVSNMRDFGA
FVALEGLRGRFEGMVHIGSIATGTRVNHPSDLLSRGQSVKVKVMSVVGDRIGLSMKDVDQ
ATGRDLTPHLRIKSEAEMAEERERHAARSASGANSAPLGGARANGNGNGAGSGITVKEDG
RGRSIKRLTSPERWELRQLIASGVAKASDYPELIEDDLRTPNTQPGADDDDEEIDIEVNE
KEAPFLKGQTSSSIEMSPVKIVKAPDGTLNRAAMAGASLAKERRELRKQEAEEEADAEAG
DMTSGWLDPMAQQGDRMFAQDRRGNILGQKAQDQPAWKKETFNKATTFGRITNLSMQEQR
QSLPIFKLRQQLVQAIRDNQVLIVVGDTGSGKTTQMTQYLAEEGFAERGKIGCTQPRRVA
AVSVAKRVAEEVGCRVGQEVGYTIRFEDCTSPETKIKYMTDGMLQRECLVDPDVSNYSVI
MLDEAHERTIATDVLFGLLKKALKRRPDLKLIVTSATLDAEKFSTYFFGCPIFTIPGRTY
PVEILYTKEPEPDYLDAALITVMQIHLSEPTGDILVFLTGQEEIDTSCEILFERMKALGP
SVPELLILPVYSALPSEMQTKIFEPTPAGSRKVILATNIAETSITIDGIYYVVDPGFVKQ
NAYDPRLGMDSLVVTPISQAQARQRAGRAGRTGPGKCYRLYTEAAYRNEMLPNSIPDIQR
QNLASTILALKAMGINDLVNFDFMDPPPAQTLLTALESLYALSALDDEGLLTRLGRKMAD
FPMEPMMSKMLIASVDLGCSEEMLSIVAMLSVQNVFYRPKDKQTQADAKKAKFFQPEGDH
LTLLTVYNGWAASKFSMPWCMDNFVQGRSLRRAQDVRKQLVGIMDRYSNDVVSCGKNYNR
VRKAICSGYFRNAAKKDPQEGYKSLAEAGGTVYIHPSSSLFNRAPEYCVYHEVVLTTREY
MREVTAVEARWLVEVAPRFFRQADALNISKRKRQEKVAPLFDRFAKHQDEWRLSKVKRVG
KSSQTFG
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaaaacaagcgacgagctctatcagctcgaacttctctctctcacaggaaag
atcgccacggagctgctcaatcacacgggcatcaacgaccgcgtgcttgcagagttcatc
ctttcgctccacgactcgaccacctcggtcgccgacttcaagtcgaagctctccgaggtg
ggagccgattttccagacagctttgtcaccaacctcgaccgtctcatcctccgacttcac
ccaaagcacaagaaggctgcagcatcctcagcgtcctccaccaacgctaaagctggctcg
tcttctcccagcgccaagggcaaggagaaagcgtccatcgaagatgagcagcgcgagcga
agagcgcgcatgtttcccggtctcgccatcaaggaccaggaatggcagccttcccaagag
aaaggccgtgacgccgtcgacgactttatgaagcagttcgaagacatggctgctgccaag
tcccgctcgcctgccaatggacgtgacagccgcatagcaacagagtcgcgctcgccacca
ccatcctcatcctcttctaggcacacagccaaatacgaccgtgatgaagcgtcttcgagc
tcccgcagaggccgagatgaccgcccgccgccccatctctctcgtccacctcccgacgat
cgaccgcaactgtacaagatctacgaaggcaaagtgagcaacatgcgcgactttggcgcc
tttgtcgctctcgaaggccttcgtggccgcttcgaaggcatggttcatatcggctccatc
gcgacaggtacgcgcgtcaaccacccttccgatctgctctcaagggggcaaagcgtcaaa
gtcaaggtcatgtccgtcgtcggcgaccgtatcggcctctccatgaaagacgtcgaccaa
gcaacgggtcgcgacctgactcctcacttgcgaatcaagagcgaggcggagatggcagag
gaacgcgaacgtcatgccgcacgctcggctagcggtgctaacagcgctcctctgggtggt
gcgagagccaacggtaacggtaatggagcgggaagcggcatcacagtcaaggaagacgga
cgtggcagaagcatcaagcgactcaccagtcccgagagatgggagcttcgacagctcatt
gctagtggtgtggccaaagcgagcgattaccccgagctaatagaggacgacctccgtaca
cccaacacccagcccggtgcggacgacgatgacgaggagatcgatatcgaggtcaacgaa
aaggaagcgcccttcctcaaagggcaaacaagctcctcaatcgaaatgtcgcccgtcaag
atcgtcaaagctcccgacggcaccttgaatcgtgctgccatggccggtgcttcgctcgcc
aaggaacgcagggagctgcgcaagcaagaagcagaggaggaagccgatgccgaggctggc
gacatgacctcgggctggctcgatcccatggcacagcaaggtgaccgcatgtttgcccag
gatcgaaggggaaacatcctcggacagaaggcgcaagaccaacctgcgtggaagaaggag
acgttcaacaaggccaccactttcggccgcatcactaatctctcgatgcaggaacagcgc
cagagtctgcccatcttcaagctgcgtcaacagctagtgcaagctatccgagataaccag
gtacttatcgtcgtcggagacacgggttcgggcaagacgacgcagatgacgcagtacttg
gccgaagaaggttttgcagagcgcggcaagattggttgcacgcagcctaggcgtgtagcc
gccgtaagtgtggccaagcgtgtagcggaggaagtggggtgcagggtggggcaagaggtc
gggtatacgatccgttttgaggactgcacaagcccggaaaccaagatcaagtacatgacc
gacggtatgctgcaacgtgagtgtctcgtcgatccagatgtttccaactactcggtgata
atgctcgacgaggcgcacgaacgcactattgccaccgacgtgctgtttggtctgctcaag
aaggcgctcaagcgacgaccggatctcaagcttattgtcacatcggcgacgctggacgca
gaaaagttttcgacatacttctttggctgccccatcttcacgattcctggccgaacgtat
ccggtcgagatcctctacaccaaggagcccgagccagactacctggacgctgcgctcatc
acggtgatgcagatccacctgtcggaacccacgggcgacatcttggtgttcttgacgggt
caagaggagatcgacacgagctgcgagatcttgttcgaacgtatgaaggcgctgggcccc
agcgtgcccgagttgctcatcctgccagtctactctgctctgccgtccgagatgcaaacc
aagattttcgagccgacgccggcgggatcgcgaaaggtgattttggcgactaacattgcc
gagacgagcattaccattgacggaatctactacgtggtcgatccggggttcgtcaagcag
aacgcgtacgacccgaggctgggcatggattcactggtggtgacgcccatctcgcaggcc
caggctcggcaacgtgccgggcgtgcgggtcgcacaggcccaggcaagtgctacaggctg
tacaccgaggcagcgtatcgcaacgagatgcttcctaactcgatccctgacatccaacgt
caaaacctggcctcgaccatcttggcgctcaaagcgatgggcatcaacgatctggtcaac
tttgacttcatggacccgcctccggcccagacgctgctgacggcactcgagtcgctgtac
gcgttgtctgcgttggacgatgaagggctgctgacgcggctgggacgcaagatggcagat
ttccccatggagccgatgatgtccaagatgctgattgcgtcggtggatctgggatgttca
gaagagatgctttcgattgtggcgatgctttcggtgcaaaacgtgttctaccgacccaaa
gacaagcagacgcaggcggacgccaagaaagccaagttcttccagccggagggtgatcat
cttacactgctcaccgtgtacaacggatgggcggcgagcaagttcagcatgccgtggtgt
atggacaactttgtgcaggggcgatcgctgcgtcgggcgcaggatgtgaggaagcagctg
gtgggcatcatggaccggtattcgaacgacgtggtgtcgtgtggcaagaactacaaccgt
gtgcgcaaggcgatctgttccgggtatttcaggaatgcggccaagaaggatccgcaggaa
gggtacaagagcttggccgaggcggggggcacggtgtacatccatccgagcagctcgctg
ttcaatcgcgcgcccgagtactgtgtgtaccacgaggtggtgctcaccacgcgcgagtac
atgcgtgaggtgacggcggtcgaggccaggtggctggtcgaggtcgcgccgaggttcttc
aggcaggcggatgcgctcaacatcagcaagcgcaagaggcaggagaaggtcgccccgctg
tttgatcgctttgccaagcaccaggacgagtggagactgagcaaagtcaaaagggtgggc
aagagttcgcagacgtttggctag
DBGET
integrated database retrieval system
