Sporisorium graminicola: EX895_001639
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Entry
EX895_001639 CDS
T09331
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sgra
Sporisorium graminicola
Pathway
sgra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sgra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EX895_001639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sgra03041
]
EX895_001639
Enzymes [BR:
sgra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EX895_001639
Spliceosome [BR:
sgra03041
]
Complex C
Other components
Step II factors
EX895_001639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
SRP54
AAA_16
AAA_30
ABC_tran
ATPase
SLFN-g3_helicase
PhoH
Sigma54_activat
TrwB_AAD_bind
Sigma54_activ_2
AAA_24
AAA_7
ATPase_2
NACHT
Motif
Other DBs
NCBI-GeneID:
40724534
NCBI-ProteinID:
XP_029741093
LinkDB
All DBs
Position
SGRAM_12:complement(268487..272392)
Genome browser
AA seq
1301 aa
AA seq
DB search
MPSHLEQEVAQRLSDTLPNASELLAQRVISLSRSLPSDKAFVNAARAFGRFDETFLIDLR
TYIASHPEKGPSDSNGISSPSPASQPATRAEPQLERSGLSTLGGEKHVFKAPSSSRPKQS
LLGLDKLAAAKRAEHSSSASPNSSYKRQRISNTQLSHLQDDLDSPADATAPAEPTFKAPS
RPASVAQAQMRARGNETPSHSGGLSDTAARRLEEHRRKRAMAADARNEASSKGKQTASSF
HPNGSISARSTASDSANGDSWRPSDRDRDQRRAPYSERSRDSTDRHPQNGRDATPSQRLE
RRTWDATPRSSARQSDDMDRWTPRHSETSARSRAPDSTLASTRSAGSRRWDETPSRRGAS
PPVLDDGVRWDQEDRQLDRDWYDMEEGGVAADEEHNPFAQYEDMTGQISAPLAAKKEKVT
ARQAQYNADSDAWERNRLQTSGVGPRTAIDLDNMDEDSENRVHLLVHDLKPPFLDGKTVF
TKQLEPINPVKDGLSDMAVFARKGSRLVRETREKAERAKAAGKVAAMGGTTLGNILGVKA
DDDEDDPAAATSDAAKSGAKDHAVSDEADSPQHGKGDSQFARHLKANTGGSEFSRSKTLK
EQRQYLPAFACREDLMKIIRENQVIVVIGETGSGKTTQLAQFLHEDGYTKYGMVGCTQPR
RVAAMSVAKRVSEEMECKLGALVGYSIRFEDCTSAETKIKYMTDGVLLRESLNEADLDRY
SAIILDEAHERSLSTDVLMGLLRKILQRRRDLKLIVTSATMNADKFASFYGGAQTFTIPG
RTFPVDVLFSKTPCEDYVDSAVKQALSIHLSHPKGDILVFMTGQEDIEVTCQVIAERLSQ
IDDAPPLLVLPIYSQMPADLQAKIFDAAENGERKCIVATNIAETSLTVDGIMYVVDAGYY
KLKVYNPKVGMDSLQITPISQANANQRSGRAGRTGSGTAYRLYTEMAFRNELFANTIPEI
QRTNLANTVLMLKSLGVSNLLEFDFMDPPPQDTILNSMYQLWVLGALNNVGELTPLGKKM
GDFPMEPSLSKMLITSVEYACSVEMLTIVSMLSVPSVFYRPKERQEESDAAREKFFVAES
DHLTLLHVYNQWRNNGYRDSWCNKHFLHPKTLRKAREVRLQLEDIMKAQKLRLVSCATDW
DAIRKCITAGYFHQAARSAGIGEYVHCRTGIKMFLHPTSALYGLGYSPEYVVYHQVVLTS
KEMMNTVTQVDPHWLAELGGAFYSIKERGSTSSVTRARRTGDLDKLTSLEQQMARDREDE
ERKQSESRQQQRKKAASKGGETPAIATPGATPFRSRGRRFV
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgccatcgcatctcgagcaagaggtggcacaacgcctctctgacacgcttcccaatgcc
agcgaactgctcgcacaacgtgtcatctcgctctcccgctcgctcccctcggacaaggct
ttcgtcaatgctgctcgtgcattcggcagatttgacgagacattcctcatcgaccttcgc
acctacattgcatcgcatcctgaaaagggcccgagtgacagtaatgggatctcttccccc
tcccccgcgtcacaaccggcaacacgcgccgagccgcagctcgaacggtcgggtctttcc
acgctcggtggcgagaaacacgtcttcaaagcaccgtcttcgtcaaggccaaagcagagc
ctgctaggtctcgacaagcttgctgctgccaagcgtgcagagcacagcagctcggcatcg
cccaattcgtcctacaaacgccaacgaatctccaacactcagctcagtcacctccaagat
gatctcgactcgccggctgatgcaacagctcccgctgaaccgacgttcaaggcgccttct
cgacctgcctcagtagcacaggctcagatgagagctcgcggtaacgagactcccagccat
tcgggtggcttgagcgatacggctgcgcgccgactagaagagcatcgacgcaagcgcgct
atggctgccgatgcaagaaacgaggcttctagcaaaggcaagcagactgcatcttctttc
catccaaatggcagcatttctgcaagatcgacggcttcagacagtgccaacggagactcg
tggcgtccctcggatcgggatcgcgatcaacggcgagcaccatattcggaacgcagtcgc
gatagcacggatcgacacccccaaaatggccgagacgcaactccatcgcaacgcctcgag
cgacgtacctgggatgcgacgccccgcagctcagcacgtcaaagcgacgacatggatcgc
tggacgccgcgacattctgaaaccagtgcaagatcaagagccccagattcgaccctagca
tccacacgctcagccggctctcgtcgctgggacgagactccatcccgacgaggcgcatcc
cctcctgttctggatgatggagtccgctgggaccaagaagatcgtcagcttgaccgagac
tggtacgacatggaggaaggtggtgttgcagccgacgaggaacacaacccctttgcccag
tacgaagatatgaccggccagatctcggcgcccctagcagccaaaaaggaaaaggtcact
gcacgtcaagctcagtacaacgccgactcggatgcatgggagcgcaaccggctgcaaact
agcggtgtcggcccgcgcactgccattgatctcgacaacatggacgaggacagcgaaaac
cgcgtgcatttgctggtacacgatcttaagccgccctttctggacggcaagacggtgttt
acaaagcagctcgaacccatcaacccggtcaaggatggtctctctgatatggccgtcttt
gctcgcaagggaagccggctggtccgggaaacgagggagaaggctgagcgtgccaaggcg
gcgggaaaggtcgcagccatgggcggcacgacgctgggcaacatcttgggtgtcaaagcg
gacgacgatgaggatgatcccgccgctgccacttccgatgcggcgaaaagcggtgcaaag
gaccatgctgtcagtgatgaggccgattctccacagcacggcaagggcgactcgcagttt
gcacgacacctgaaagccaacaccggcgggtccgagttcagccgctccaagacgctaaaa
gaacaacgccagtacctccctgcctttgcctgccgcgaagacctcatgaagatcatccgc
gagaaccaggtgatcgtcgtcattggcgagacaggctcaggaaagaccacgcagctcgcc
caatttctgcacgaagacggctacacgaaatacggcatggttggctgcacgcaaccgcgc
cgtgtcgccgccatgagtgtcgcaaagcgtgtcagcgaggagatggagtgcaagctgggc
gcgctcgtgggctattcgatccgattcgaggactgcaccagcgccgagactaagatcaag
tacatgaccgatggtgtgctgctgcgagaaagtctcaacgaagcggacttggatcggtac
agcgctatcatcctcgacgaggcgcacgagcgatcgctcagcaccgatgtgctcatgggt
ctgcttcgcaagattctgcaacgccgacgcgatctcaaactcatcgtcacttcggctacc
atgaacgcggacaagttcgcctcgttctacggcggtgcgcagacgtttaccatcccgggc
cggacgttccccgtcgacgtgctgttcagcaagaccccttgcgaagactacgtcgacagt
gcagtcaagcaagcgctctcgattcacctctcgcatcccaaaggcgacatcctcgtgttc
atgacgggtcaagaagacatcgaggtgacgtgtcaggtcattgccgagcgtttgagccag
attgacgacgcacccccgctgctggtgctgcccatctactcgcagatgcccgccgaccta
caggccaagatctttgacgcggccgagaacggcgaacgcaagtgcatcgtcgcgaccaac
atcgccgagacgtcgctcaccgtcgacggcatcatgtacgtcgtcgatgcgggctactac
aagctcaaagtgtacaatcccaaggtgggtatggactcgttgcagatcacgccgatttcg
caggccaatgcgaaccagcgctcgggcagggcgggccgcacgggcagcggcacggcgtac
cggttgtataccgagatggcgttccgcaacgagttgtttgcgaacacgatcccggagatc
cagcggacgaatctggcgaacacggtgttgatgctcaagagtctgggcgtgagcaatctg
ctcgagtttgattttatggatccgccgccgcaggatacgatcctcaacagcatgtatcag
ctgtgggtgttgggcgcgctgaacaacgtgggtgagctgacgccgctgggcaagaagatg
ggcgatttccccatggagcccagcctgtccaagatgctcatcacaagcgtcgagtatgcg
tgctcggtcgagatgttgaccatcgtcagcatgctgtcggtgccatcagtgttctaccgc
cccaaagagcggcaagaggaaagcgacgcggctcgcgagaagttctttgtcgccgaatcc
gaccatctgacccttctgcacgtctacaaccaatggcgcaacaacggctaccgcgactca
tggtgcaacaagcactttctccatcccaagacgctccgcaaagcgcgcgaagtgcgcctg
cagctcgaagacatcatgaaggcgcaaaagctccggctggtctcgtgtgccaccgactgg
gacgccatccgcaagtgcatcaccgcaggctacttccaccaggccgcgcgctcggcgggg
atcggagagtacgtccactgccgcacgggcatcaagatgttcctccaccccacctcggcg
ctctacggtctcgggtacagccccgagtacgtcgtataccaccaggtcgtgctgacttcc
aaggagatgatgaacactgtcacgcaggtggacccgcactggctggccgagttgggcggt
gcgttttattccatcaaggagaggggcagtacgagcagtgtgacacgggcaaggaggact
ggcgatctggataagctcaccagtctcgaacagcagatggccagggatcgtgaggacgag
gagcgcaagcagagcgagagcagacaacagcagaggaaaaaggcggccagtaagggtggc
gagacgccggcgatcgccacaccgggtgcgacaccgttcagatctagggggagaaggttc
gtatag
DBGET
integrated database retrieval system
