KEGG   Sporisorium graminicola: EX895_002396
Entry
EX895_002396      CDS       T09331                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
sgra  Sporisorium graminicola
Pathway
sgra03018  RNA degradation
sgra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sgra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EX895_002396
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EX895_002396
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sgra03019]
    EX895_002396
   03041 Spliceosome [BR:sgra03041]
    EX895_002396
Messenger RNA biogenesis [BR:sgra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     EX895_002396
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     EX895_002396
Spliceosome [BR:sgra03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    EX895_002396
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 40725291
NCBI-ProteinID: XP_029740750
LinkDB
Position
SGRAM_14:complement(join(438704..438955,439036..439086,439167..439265,439378..439419,439508..439510))
AA seq 148 aa
MLPLSLLNAAQNKPMLVELKNGSTFNGHLVACDNFMNLTLREVYETSASGEQFWKQKECY
IRGSTIKYCRVADSVIDQVKEHEEQARKQRQHGSANSGLSGGVSLGNRGGGGGGRGGYNR
GGGGGGGRGGSSGERGARGGGRGRGRGQ
NT seq 447 nt   +upstreamnt  +downstreamnt
atgttgccattgtccttgctcaacgcagcgcaaaacaagcccatgcttgtggagctcaaa
aacggatcgacgttcaacggccacctcgtagcgtgcgataactttatgaacttgacgctg
cgagaggtgtacgagaccagtgccagcggcgagcaattctggaagcaaaaggaatgctat
attcgcggcagcaccatcaaatactgccgtgtcgcagattcagtcatcgaccaggtcaag
gaacacgaagagcaggcgcgcaaacagcgtcagcacggcagcgccaactcgggtctctcg
ggcggcgtcagcctgggcaaccgcggtggcggtggcggcgggaggggcggctacaaccgc
ggaggaggtggtggtggtggacgtggaggctcctcgggggaacgcggtgcaaggggtggc
ggaaggggccgaggtagaggccagtaa

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