Sporisorium graminicola: EX895_003166
Help
Entry
EX895_003166 CDS
T09331
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sgra
Sporisorium graminicola
Pathway
sgra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sgra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
EX895_003166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgra03021
]
EX895_003166
03019 Messenger RNA biogenesis [BR:
sgra03019
]
EX895_003166
Transcription machinery [BR:
sgra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
EX895_003166
Messenger RNA biogenesis [BR:
sgra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
EX895_003166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCHC
zf-CCCH_2
zf-CCCH_4
zf-CCCH_9
Motif
Other DBs
NCBI-GeneID:
40726061
NCBI-ProteinID:
XP_029740055
UniProt:
A0A4U7KU81
LinkDB
All DBs
Position
SGRAM_19:621035..622138
Genome browser
AA seq
367 aa
AA seq
DB search
MNVPLTLHHHGAGPSSHSSHRPLITQQRLVGASSSIPADFIHNEFSFEQHIKDSLNVKLD
NDAQLCPDYSERLQCPRGASCPRRHVKPSHLNFLPQGSTALRDPNKRTVCKHWLRGLCKK
GDQCDYLHEYDMRRIPECRFYATFGFCNSGDDCLYLHVDPAIKRRECEKYNRGFCPKGPL
CAKKHIRRVACPLYLTGFCPQGLECPRGHIKSTPPSSASRSNSPILTHRPLTAAEAFGMG
GGRGDEYADGGGMQRNRAPPGRYGMPAGAGFAARGDDAAGRAPMGYGNNTNTMPRRPNNG
FGPQSQGAQDGGRPGWRKDLSEVLCFKCGEMGHFANTCPNPALPGNRGGVERGPGGQQRQ
RDRPRPY
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtgccactcacactgcaccaccatggtgcgggaccaagctcacactcatctcac
cgtccgttgatcacacagcaacgcctggtcggcgcttcgagttccattcccgccgacttt
atccacaacgagtttagcttcgagcagcacatcaaggacagtctcaacgtcaagctggac
aacgacgcgcagctatgtccagattactcggagaggctgcagtgtcctcgcggtgcctca
tgtccacgtcgacatgtcaagccgagccatctcaactttctgccgcaagggtcgacagcg
ctacgtgatcccaacaagcgcaccgtctgcaagcattggcttcgaggactgtgtaagaag
ggcgaccagtgcgactacttgcacgaatacgatatgcgaaggatccccgaatgtagattt
tacgccacgtttggattctgcaacagcggcgatgactgcctctatcttcacgttgacccc
gccatcaagaggagggagtgcgaaaagtacaatcgaggcttctgtcccaaaggccccctc
tgcgccaagaagcacattcgtcgcgttgcatgtccgctctacctcactggtttctgccca
caggggctcgagtgcccacgcggacacatcaagagtacaccaccctcgagcgcatcacgg
tccaattcacctatcctcacacatcgacccttgacagcggcagaagcgtttggcatggga
ggaggtcgcggcgacgagtatgcagacggcggagggatgcagaggaatcgtgctccgcct
ggacgttatggaatgccggctggagcagggttcgctgcacgtggtgatgatgcggcagga
cgcgcacccatgggctacggcaacaatacgaacaccatgccaagaaggcccaacaacgga
ttcggcccccaatcgcagggagcacaagacggaggacgtcctggatggcgaaaggatctg
tccgaagtgctctgcttcaaatgcggagagatgggtcattttgccaacacgtgtcccaac
ccagcacttccaggcaatcgtggaggcgtcgagcgtggcccaggaggccaacaacgtcaa
agagatcgaccgcgaccatactag
DBGET
integrated database retrieval system