Sporisorium graminicola: EX895_003609
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Entry
EX895_003609 CDS
T09331
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
sgra
Sporisorium graminicola
Pathway
sgra03013
Nucleocytoplasmic transport
sgra03015
mRNA surveillance pathway
sgra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sgra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EX895_003609
09122 Translation
03013 Nucleocytoplasmic transport
EX895_003609
03015 mRNA surveillance pathway
EX895_003609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgra03019
]
EX895_003609
03041 Spliceosome [BR:
sgra03041
]
EX895_003609
03009 Ribosome biogenesis [BR:
sgra03009
]
EX895_003609
03012 Translation factors [BR:
sgra03012
]
EX895_003609
Enzymes [BR:
sgra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EX895_003609
Messenger RNA biogenesis [BR:
sgra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
EX895_003609
mRNA cycle factors
Stress granule specific factors
EX895_003609
Spliceosome [BR:
sgra03041
]
Complex C
Other components
EJC/TREX
EX895_003609
Ribosome biogenesis [BR:
sgra03009
]
Eukaryotic type
90S particles
Helicases
EX895_003609
Translation factors [BR:
sgra03012
]
Eukaryotic type
Initiation factors
eIF-4
EX895_003609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
UvrD-helicase
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
40726504
NCBI-ProteinID:
XP_029739580
LinkDB
All DBs
Position
SGRAM_21:413696..414889
Genome browser
AA seq
397 aa
AA seq
DB search
MSGGVNAGDNKLVFESSEQVKVATTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIR
GRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLN
VQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIRRRHLRTKNIKMLILDESDELLN
MGFKDQIYDVYRYLPPSTQVVLLSATLPQDVLEMTSKFMTDPVRILVKRDELTLEGIKQF
FVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLSAKMKENNFQVSSMHGEMQQK
ERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRK
GVAINFVTVDDVRTLRDIEQFYSTQIDEMPVKLEDVL
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcgtcaatgcaggcgacaacaagctcgtctttgagagttccgaacaggtc
aaggtcgccaccaccttcgacgcaatgggactcaaggaagatctccttcgtggcatctat
gcgtacaacttcgaaaagccatccgcgattcagcagcgcgccatcctccccatcatccgt
ggccgcgatgtgatcgcacaagcgcagtcaggcacgggcaagacagccacgtttagcatc
tcgatgctccaatccatcgataccactcttcgcgagacccaggcgctggtgctcagtcca
acgcgagaattggccattcagatccaatctgtggttcttgcgctgggtgactatctcaac
gtacagtgtcatgcgtgtatcggagggacaagtgtaggggaggacatccgcaagctcgat
tacggtcagcatattgtgtcgggcacaccggggcgagtgtacgacatgatccgacgccga
cacttgcgcaccaaaaacatcaagatgctcatcctcgacgagtccgacgagctcctcaat
atgggtttcaaggaccagatctacgacgtctaccgctacctcccaccgtcgacccaagtt
gtgttgctctcagcaacgctaccgcaagacgtgctcgagatgacgtccaagttcatgacc
gatccggtgcgcatccttgtcaaacgtgacgagctcacgctcgaggggatcaagcagttc
tttgtcgcagtcgaaaaggaggagtggaaattcgacacgctttgcgatctctacgatacc
ctcaccatcacgcaagccgtcatcttttgcaatacccgacgcaaagtggattggttgtcg
gcaaagatgaaggagaacaacttccaggttagcagcatgcatggtgagatgcagcagaag
gagcgtgacgaagtcatggccgagttcagacagggcagctcgagggtgttgatcaccacc
gatgtttgggccagaggcattgacattgccaacatctcgttggtcatcaactacgatctg
cccaccaacagggagaactacattcacaggatcggcaggagtggaaggttcggcaggaaa
ggtgtcgcaatcaactttgtcaccgtggacgatgttaggacgctgcgggatatcgagcag
ttctattcgacccagatcgacgagatgcccgtcaagttggaagacgtgctgtga
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