Sporisorium graminicola: EX895_003650
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Entry
EX895_003650 CDS
T09331
Name
(RefSeq) hypothetical protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
sgra
Sporisorium graminicola
Pathway
sgra03008
Ribosome biogenesis in eukaryotes
sgra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgra00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
EX895_003650
09123 Folding, sorting and degradation
03018 RNA degradation
EX895_003650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgra03021
]
EX895_003650
03019 Messenger RNA biogenesis [BR:
sgra03019
]
EX895_003650
03009 Ribosome biogenesis [BR:
sgra03009
]
EX895_003650
03016 Transfer RNA biogenesis [BR:
sgra03016
]
EX895_003650
Transcription machinery [BR:
sgra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
EX895_003650
Messenger RNA biogenesis [BR:
sgra03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
EX895_003650
Ribosome biogenesis [BR:
sgra03009
]
Eukaryotic type
Pre-60S particles
RNases
EX895_003650
Transfer RNA biogenesis [BR:
sgra03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
EX895_003650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
40726545
NCBI-ProteinID:
XP_029738958
UniProt:
A0A4U7KRK2
LinkDB
All DBs
Position
SGRAM_22:88022..91753
Genome browser
AA seq
1243 aa
AA seq
DB search
MGVPALFRWLSKKYPRIVSSVQEEDPKTAPGPDGTEITLPLDTSTPNPNGEEFDCLYLDM
NGIVHPCTHPEGKPAPETEEEMMIEVFAYTERVVNMVRPRRLLMMAIDGVAPRAKMNQQR
SRRFRAAKEAREKHEEKEAALAEWKAKGLPVTDDALESKKAWDSNAITPGTPFMDLLAAS
LRFWVAQKINTDPGWKDVQVIISDASVPGEGEHKIMEHIRRQRSHPEHDPNTKHVIYGLD
ADLIMLSLATHEPYFKVLREDVFAADNKPKTCNLCGQPGHFAASCTGAAKKKSGKHDEIA
PTPPEKKPFIFLDVATLREYLEVELNIPQLPFAFDLERAIDDWVFLIFFVGNDFLPHLPS
LEIRDGAIDTLLRIWKKELPAMGGYLTNHGRVELGRAQLILSGLASEEDEIFRRRKEDED
RRENNKKRREEMQKRRERELDEGNFGNGSMVPVVTKKRPAHETEKPAFNGVSAQDARDQA
NSNNKSYDPRKKTVVLGGDNNQVVRDRNAARQANMDAAEALKAELMGGTAAKESETEVEP
PVKKVKTDSGAEAVRTDEQENSEPNPVSVEAKADQGDADAVAKTEGENGNGDADKADADE
DTAADADEDVDDDENDDLEGNEDVDPVTTIKKRTVNADGTVDYEDTVKMWEPGYRERYYK
EKFGVDLSDTDFRRQVVKSYIEGLCWVLAYYYQGVPSWQWYYPFHFSPFAADFEDLESLD
IKFELGAPFRPFEQLMGVLPADSRASIPSAFHPLMTDSDSEIIDFYPGEFEIDMNGKKMA
WQGVALLPFIDEKRLLDALKEKYPLLSEDEVRRNGFGNNTLFVGSESRLYDFLCEEIYAK
KPSTEDGKPKPVPVNPALSGGVTGYVKPDPVCVPGSTFNSPLTGQDLHDIHNDRSISVLY
DFPDQKTPHRSVLLKGLKPPKRVLSAAEIDWVKRGSPDNRGRGRGRGGHFGGPGRDFHRN
NNNNSNSNSSQQHPNQNNGYGGENGHTNPNFRGHNGAGGYGGSYNGASGGGGGGYGGHGG
GYQQEHQPYAHNVGGAGGGYGGYGGYGSSGGYGDGAGGGGYGGYGSGGGYGSAPAAASAY
SSGGGYDPYAGYGGSGGGYGGYGAPSYAPSGPRRDDRYAAYTQPSAHVGGGRGGRQPNAN
YAGLPSLGGPPPAAAPAPAAAYGGYGAAAPTPAGGAAYGGYGGGGYGAYGAAPPARGYGG
APPAPHRGGGRGGGRGGGRGGRGGGGNSSASYGGHGGAYGSFY
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccccgctctcttcagatggctctcgaagaagtatcctcgcatcgtctcgtcg
gtgcaggaggaggatccaaaaacagctcccggcccagatggtaccgagatcacactaccg
ctcgacacttccacaccaaatcccaacggtgaagagttcgactgtttatatttagatatg
aacggcatcgtacatccatgtacacatccggagggcaaaccagcgccagaaaccgaggag
gagatgatgatcgaggtgttcgcatacacagaacgcgtcgtcaacatggtccgtccgcgt
cgtctcctcatgatggctatcgacggcgttgctccacgtgcaaagatgaatcagcagcga
tcgcgtcgtttccgtgctgcgaaagaggcgcgcgagaagcacgaggagaaggaagccgcc
ctcgcagagtggaaggccaaaggtctgcccgtcaccgacgatgcactcgaatccaaaaag
gcctgggactcgaacgccatcaccccgggcactcccttcatggaccttctggccgcctcg
ttacgcttctgggtggcgcaaaagatcaacacagatcccggctggaaggacgtccaggtc
atcatctcggatgccagcgttcccggtgagggagaacacaagatcatggaacatatccgt
cgtcagcgatcccatcctgaacacgaccccaacaccaagcacgtcatctacggtctcgac
gccgatctcattatgctctccctcgccacccacgagccttacttcaaagtgcttcgtgag
gacgtctttgccgctgacaacaagcccaagacttgcaacctctgcggtcagccaggccat
tttgccgccagctgcacaggcgctgccaagaaaaagtcgggcaaacacgacgagatcgcg
cccacgcctcccgaaaagaagccattcatcttcttggatgtggccacactgcgcgagtac
ctcgaagtcgagctcaatattccgcagcttcccttcgcctttgacctcgaacgcgccatc
gacgactgggtcttcctcatcttctttgtcggtaacgatttcctgccccacctgccctcg
ctcgagatcagggacggtgccatcgatacactcctccgcatctggaaaaaggagctcccg
gccatgggtggctaccttaccaaccacggtcgcgtcgagctcggtcgcgcccagctcatt
ctcagcggtctcgcctccgaagaagacgagatcttccgtcgcaggaaggaggacgaggac
aggcgcgagaacaacaagaaacgacgcgaggagatgcagaagcgcagagagcgcgagctc
gacgaaggcaactttggcaacggctccatggtccccgttgtcaccaagaagcgtccggct
cacgagaccgagaagccggccttcaacggcgtgtcggcccaagacgcacgcgatcaggcc
aacagcaacaacaagtcgtacgatccacgcaagaagaccgtcgtactgggaggcgacaac
aaccaggtagtccgcgatcgaaatgctgcgaggcaagccaatatggatgctgccgaagcg
cttaaggctgaactcatgggtggcaccgcggcaaaggaatcggagaccgaagttgagccc
cctgtcaagaaagtcaagactgattcgggtgccgaggcagtcagaacagatgagcaggag
aacagcgaaccgaaccctgttagcgtcgaagcgaaagctgatcaaggcgacgctgatgcg
gtggcgaagaccgaaggcgaaaacggcaatggcgatgctgacaaagctgatgctgacgag
gacactgcagccgacgctgacgaagatgtcgacgacgacgaaaatgacgacctcgagggt
aacgaggacgttgaccccgttactaccatcaagaagcgtacggtcaacgcagacggcact
gttgactacgaagatactgtcaagatgtgggagccgggctaccgcgagcgatactacaag
gagaagttcggcgtcgatctctccgacaccgacttccgccgacaagtcgtcaagtcctac
atcgagggtctctgctgggtattggcctactactaccaaggtgtgccttcgtggcaatgg
tactaccctttccatttctcgccgtttgccgccgactttgaggaccttgagtcgctcgac
atcaagtttgagctcggtgcgcctttcaggccgttcgagcagctcatgggagtcctcccc
gccgactcgcgtgcctcgatcccgtcagcgttccatccgctcatgactgattccgactcg
gaaattatcgacttttacccgggcgagttcgagatcgatatgaacggcaaaaagatggca
tggcaaggtgtcgccttacttcccttcatcgacgaaaagcgtctgctcgatgcactcaag
gaaaaatacccgctgctcagcgaggatgaggtgcgccgtaacggattcggcaacaacacg
ctcttcgttggaagcgagtcgcgtctgtacgactttttgtgcgaagagatctacgcaaag
aagccttccaccgaggacggcaaacccaaacccgtccccgtcaacccagccctcagcggc
ggtgtcacgggctacgtcaaacccgaccccgtctgcgtacccggatcgacattcaactcg
cccctcaccggccaggacctgcacgacattcacaatgaccgctcgatctcggtgctctac
gacttcccggaccagaagacgccacaccgatcggtgctgctcaagggactcaagccaccc
aagcgtgtactctcggctgctgagatcgactgggtcaagcgaggaagccctgacaatcgt
ggtcgtggtcgaggccgtggcggccacttcggaggtcccggtcgagacttccaccgcaac
aacaataacaacagcaacagtaacagcagccagcagcacccgaaccagaacaacggctac
ggtggtgagaatgggcatacgaatccaaacttccgcggtcacaacggtgctggcggctat
ggtggatcctataatggcgcatctggcggtggcggtggaggatatggaggccatggcggt
ggataccagcaagagcaccagccatacgcgcacaatgtcggtggcgctggcggaggatac
ggcggctacggtggctacggcagcagtggtggctacggcgatggtgcaggaggaggagga
tacggcggctacggaagcggcggcggctacggttccgcaccagctgcagcgtcggcgtac
tcttccggaggcggctacgacccttatgctggctacggcggcagtggtggcggatatggc
ggctacggcgcaccctcgtacgctccttccggcccaaggcgcgacgacagatacgcagca
tacacgcaaccgagcgcacacgttggtggtggccgtgggggacgtcaacccaacgccaac
tacgctggattgccgagtctaggcggcccccctccggctgccgcccctgctccagctgcc
gcgtacggagggtacggtgcggctgctcccactcctgccggcggtgctgcctacggaggc
tacggcggaggtggatacggcgcgtacggtgccgcacctcctgctcggggctatggcggt
gctccccctgctcctcaccgcggaggtggcagaggcggtggcagaggtggtggtcgcggc
ggtcgcggcggcggtggcaacagcagtgcttcctacggcggccacggtggcgcgtacggc
tcgttttactga
DBGET
integrated database retrieval system
