Sporisorium graminicola: EX895_004167
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Entry
EX895_004167 CDS
T09331
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sgra
Sporisorium graminicola
Pathway
sgra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EX895_004167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgra03019
]
EX895_004167
Messenger RNA biogenesis [BR:
sgra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
EX895_004167
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
EX895_004167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
WKF
Motif
Other DBs
NCBI-GeneID:
40727062
NCBI-ProteinID:
XP_029738864
UniProt:
A0A4V6ETV8
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Position
SGRAM_23:102793..104928
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AA seq
711 aa
AA seq
DB search
MAARKLQTEIDKTLKKVAEGVEIFEDMYELLQRSTNLTQKEKMESDLKTQIKKLQRLRDQ
IKTWLQSNDIKDKKPLLDNRKLIETQMEKFKAIEKEMKTKAFSKEGLIAAAKMNPKDREK
AEISDWLSTQVDELARQIESAEAEIETISGSGKKKKGSAKDERASQLEIANDRRNWHISR
LEILLRMLENGNLETDRVTDIKEDISYFVESNTEEDFEEDEGIYDDLNLDDGEEAFGLKE
NDDTHSNVDSTAGMDDLSFRDIKDTPSKPRRDSLAEINSSSSTNNNSTNQATTAPTTNNN
KKEETATSPVSATPAQPAASPIAPASASKKTAKKASQEPVAVPKEKAVPTANFAQAKAPP
ASQSAVLSPPKAPSAAPLPPIRYAAAAAAAVASSAAASAADNTAASPVTTTGSIATDSAT
DSAHAASSNSTSAAPGSQIQPSSAAAQPVGAPSTPAKSSVDALRNDAADKARSSSPAPPG
LTKVDSTSANSNNNGAAQDGSTSGFQPAQLAASSAAASVVQPAGGGAGTAAQQAAAQKEA
GTEARLPTSLTDLVSSFESAKQKSLRRDANVGLVHKSLELSFMNVPEPLDSDKPKYYVPK
NPFPTPSYYPQTPASVFDNPALYSKFDVDTLFYIFYYQQGTYHQYLAAKELKKQSWRFHK
QYLTWFQRHSEPQAITDEYEQGVYVYFDWEGSWCQRKKSDFRFEYRWLEDN
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgagaaagttgcaaacagagatcgacaagacgctcaaaaaggtcgcagagggc
gtcgagatcttcgaagacatgtacgagctcctccaacgctctacaaatctgactcaaaag
gagaagatggagtctgatctcaaaactcagatcaagaagctccaacgtctacgtgaccag
atcaagacctggctgcagagcaacgacatcaaggacaagaagccgctgctcgacaaccgc
aaactcatcgagacccagatggaaaagttcaaggccatcgaaaaggagatgaagacaaaa
gccttctccaaagaaggtctcatagctgccgcaaagatgaaccccaaggatcgcgagaag
gccgaaatctcggattggctgtctacgcaggtcgacgagctcgcgcgacagatcgagtca
gccgaagcagagatcgaaaccatctcgggctcaggcaagaagaagaagggatctgccaag
gacgagcgcgcatcgcagctcgaaatcgcaaacgaccgcagaaattggcacatctcgcgg
ctcgagatcttgttgcgaatgctcgaaaacggcaacctcgagaccgatcgtgtcacggac
attaaggaagacatctcctactttgtcgagtccaacacggaggaagactttgaggaggat
gagggcatctacgacgatctcaacctcgatgatggcgaagaagcgtttggtctcaaggaa
aacgacgacacgcacagcaacgtcgactcgacggctggtatggacgacctcagtttccgc
gacatcaaggacacgccttccaaaccacgacgagacagtctggctgagatcaacagcagc
agcagcacgaacaacaacagcaccaaccaagccaccactgcccccactaccaacaacaac
aagaaggaagagacagccacgtcgccggtgtccgcgacaccagcgcaacccgctgcttcc
ccaattgcgcctgcttcagccagcaaaaagacggcgaagaaggcatcgcaagagcccgtg
gccgtaccaaaggagaaggcagtgcccaccgccaactttgcacaggccaaagcaccgcct
gcatctcagtctgctgtcctttccccacccaaggcaccaagtgctgctccacttccgcct
atccgttacgctgccgccgcagctgcagctgtcgcatccagcgcggctgcatctgccgcg
gacaacacggccgcttcacctgtgacgacaactggatccatcgcgaccgactcggcaaca
gactccgcccacgctgccagctcgaactcaacatcggcagctcctggctcgcaaatccag
ccgtcatcagcagccgcacagcctgtgggtgcaccttcgacgccggcaaagtcgagcgtg
gacgcactcaggaatgatgcagcagacaaggcacgatcgtcatcgcccgcaccacccggc
ctcaccaaagtggactcgaccagcgccaacagcaacaacaatggtgcagcacaagatgga
agcacatctggattccagcccgcacagcttgcagcttcgtcggcggcagcgagtgtggtg
cagcccgcaggcggaggagctggcacagcagcacagcaagcggcagcgcaaaaggaggcg
ggcacggaagcgcgattgccaacttcgctcacggacctggtttcgtcgttcgagtcggcc
aagcaaaagtcgctgcgtcgggatgccaacgtggggttggtgcacaagtcgcttgagttg
tcgttcatgaacgtgccggaaccgctggattcggacaagcccaagtactacgtgcccaag
aacccgttccccacaccaagctactacccgcagacgcctgcaagcgtcttcgacaacccg
gcgctgtactccaagtttgatgtggacacactgttttacatcttctactaccagcagggg
acctaccaccagtatctggcggccaaggagttgaagaagcagagctggcgattccacaag
cagtacctgacgtggttccagaggcattcggagccacaagctatcacggacgagtacgag
cagggcgtctatgtctactttgactgggagggcagctggtgtcagcgcaaaaagtcggat
ttcaggttcgagtaccgctggttggaggacaactag
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