Sporisorium graminicola: EX895_004289
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Entry
EX895_004289 CDS
T09331
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sgra
Sporisorium graminicola
Pathway
sgra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EX895_004289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgra03019
]
EX895_004289
03041 Spliceosome [BR:
sgra03041
]
EX895_004289
03009 Ribosome biogenesis [BR:
sgra03009
]
EX895_004289
03016 Transfer RNA biogenesis [BR:
sgra03016
]
EX895_004289
Enzymes [BR:
sgra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EX895_004289
Messenger RNA biogenesis [BR:
sgra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
EX895_004289
Spliceosome [BR:
sgra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
EX895_004289
Complex C
U4/U6.U5 tri-SnRNP related factors
EX895_004289
Ribosome biogenesis [BR:
sgra03009
]
Eukaryotic type
Pre-60S particles
Helicases
EX895_004289
Transfer RNA biogenesis [BR:
sgra03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
EX895_004289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
40727184
NCBI-ProteinID:
XP_029738635
UniProt:
A0A4U7KQJ3
LinkDB
All DBs
Position
SGRAM_3:complement(159313..162702)
Genome browser
AA seq
1129 aa
AA seq
DB search
MDPDGLFDFLAPAEAAPSPATSSGSSPSKKQKKRSKAAATASSSSSKAAAAPQTNDAPKA
DSQNGHAAAHDIGNTASTDEDESAPGSSKRQKLNAVSDKPAPVPTVVTDEFTDEATQAIP
VDSGIAPSNSADANEAADGDAAAVSNADGASAADAKKMHVTHSVRHQVALPPDYPYVPLS
QHVPNNPPAKEYKFTLDPFQRNSVSCIERNESVLVSAHTSAGKTVVAEYAIAQCLKNGQR
VVYTSPIKALSNQKFRELTAEFGDVGLMTGDVTINPSASCLVMTTEILRSMLYRGSEIMR
EVAWVVFDEIHYMRDKERGVVWEETIILLPRKVRYVFLSATIPNAMQFAEWIAHTHAQPC
HVVYTDFRPTPLQHYLFPQGGEGIHLVVDERGTFREDNFQKAMGALADSKGEDVADPNAG
GGKRRGQVKKGGNGGKKGPSDIYKIVKMIMVKNYNPVIVFAFSKRECEALALQMSKLEFN
TDDEKEMVSTVFTNAINALSEEDRSLPQIEHILPLLRRGIGIHHGGLLPILKEVIEILFQ
EGLIKVLFATETFSIGLNMPAKTVVFTAVNKWDGKEFRNLTSGEFIQMSGRAGRRGLDDR
GIVIMMFDEKLEPSAAKTMAKGEADRLNSAFHLGYNMILNLMRVEGISPEYMLERCFFQF
QNAASVPALEAEQKAAEQQRDLIKVEREEEVAEYYDVKHQLETLRKDVQTVITHPSYVLP
FLQPGRLVRVCHDDLDFGWGAVVSYEKRLPNTPGKRGPAIDPNAPPQNHYVVDVLLHCAS
GASSISSDKKSSKNDNATHLLPCPEGKKGEMVVVPVLLSTIQSLSGIRIFLAKDLRPTEP
RETVRKNLVEVQRRFPNGVPLLDPIKDMKIKDESFAHLVEKIKILDDKLSSSAIRKDKDL
PRLYAAYAKKQEAQEVVSGIAKKIAAAHSVLQLDELKCRKRVLRRLGFTTSDDVVEKKGR
VACEISTGDELLLTEMIFNGVFNDLTPPQCAALLSCFVFGEKSTTQTRLNETLAAPLRIM
QETARRIAKVSIESKLPLVEEEYVSSFKVELMDLVMHWCNGAKFAEICKMTDVFEGSIIR
CFRRLQELIRQLVQAAKAIGNEGLAEKFEKTLAMLEREGSIIFSPSLYL
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atggatccagacggcctgttcgacttcctcgctcctgcagaggctgcgcccagtccagcc
acatcttcaggttcttccccttccaagaagcagaagaaacgatccaaagcggcagctact
gcctcttcctcttccagcaaagcggctgccgcaccacagacgaatgacgctccgaaagcc
gactcacaaaatggccatgcagcagcacatgatattgggaacactgcttcgaccgacgaa
gacgagtccgcaccaggatcgtccaaacgccagaagctcaatgccgtctcggacaagccg
gcgcccgtgccaactgtggtgacggacgaattcaccgatgaggctacgcaagccatcccc
gtagactcgggtattgcgccgtccaactctgcagacgcgaacgaagctgctgatggcgac
gctgctgcggtgtcgaacgcagacggtgcttctgccgctgatgctaaaaagatgcacgta
acccattccgtacgccatcaagtcgcacttcctcccgactatccgtacgtgcctctttct
cagcatgtacccaacaacccaccggccaaagaatacaagttcaccctcgacccattccag
cgcaactcggtctcgtgcatcgagcgcaacgaatcggtcctcgtctccgcccacacctcg
gcaggtaaaaccgtcgtcgccgagtacgccattgctcaatgcctcaagaatggccaacgt
gtcgtctacacctcccctatcaaggcgctctccaaccagaagttccgcgagctcaccgcc
gagtttggcgacgtcggcctcatgaccggcgacgtcaccatcaacccttcggcgtcgtgc
ctcgtcatgaccaccgagattctgcgttccatgctctaccgtggctccgaaatcatgcgc
gaagtggcgtgggtcgttttcgatgaaattcactacatgcgcgacaaggagcgtggtgtc
gtttgggaggagaccatcatcctcctgccgcgcaaggtccgctacgtcttcctctcggcc
accatccccaacgccatgcaattcgccgagtggattgctcatacccatgcccagccttgt
cacgtcgtctacaccgattttcgtcccacacctctccagcattacctcttcccgcaaggc
ggtgagggtattcaccttgtcgttgacgagcgcggcaccttccgggaggacaactttcaa
aaggctatgggtgcgcttgccgactccaaaggcgaggatgtcgctgaccccaacgctgga
ggcggcaagcgtcgcggccaggtcaagaagggcggcaatggaggcaagaagggcccctcg
gatatctacaagatcgtcaagatgatcatggtcaaaaattacaaccctgtcattgtgttc
gccttctccaagcgcgaatgcgaggcgcttgcactccagatgagcaagctcgagttcaac
acggatgacgaaaaggagatggtctccaccgttttcaccaacgccatcaacgcgctgtcg
gaagaagatcgcagtctaccacagatcgagcacattctacccctccttcgtcgcggcatc
ggtatccaccacggaggtctcttacccatcctcaaggaggtcatcgagatcctgtttcag
gaaggtctcattaaggtactcttcgccactgaaaccttttcaatcggtctcaacatgcct
gccaagaccgtcgtattcactgcagtcaacaagtgggacggcaaggagttccgcaacctc
acctcgggcgagttcatccagatgtccggtcgagccggtcgacgtggtctcgacgaccga
ggcatcgtcatcatgatgttcgacgaaaagctcgaacccagtgccgccaagaccatggcc
aagggagaagccgaccgtctcaactcggcgtttcatctgggatacaacatgattctcaat
ctgatgcgtgttgaaggtatttcgccagagtacatgctggagcgttgtttcttccaattc
cagaacgccgcttcggtgcctgcgctcgaggccgagcagaaggcggcggaacagcagcgc
gatctgatcaaggtcgagcgagaagaagaggtcgccgaatactacgatgtcaagcaccag
cttgagacgctccgcaaggatgtgcagaccgtcatcacgcatccgtcgtacgtcctgccc
ttcctgcagccgggacgactagtgagagtgtgccacgatgatctcgacttcggctggggt
gcggtggtgtcgtatgaaaagcgtctgcccaacacgccaggcaagcgcggacccgccatc
gaccccaatgcgccgcctcagaaccactatgttgtcgacgtgcttttgcactgcgcatcg
ggtgcgagctccatctcgtcagacaagaagtcgtccaagaacgacaacgccactcaccta
cttccctgtcctgagggtaaaaagggcgagatggtcgtggtgcccgtgttgctctctacg
atccagtcgttgtctgggattcgtatcttcctcgccaaggatctgcgtcccaccgagccg
cgagagacggtgcgcaagaacctcgtcgaagtgcaacgccgtttccccaatggcgtcccc
ctcctcgaccccatcaaggatatgaagatcaaggacgagtcttttgcgcacctggtcgag
aagatcaagatcctcgacgacaagctctcgtcctcggccattcgcaaggacaaagacctg
cctcgcctttacgctgcctacgccaagaaacaggaggcacaagaagtggtgtcgggcatc
gcgaaaaagatcgcagcggctcactcagtactgcagctggacgagctcaagtgccgcaag
cgtgtgctccgtcgacttgggttcacgacttcggacgacgtggtggagaaaaagggccgt
gtcgcttgcgaaatctcgacgggcgacgaactgctgctgaccgagatgatcttcaacggc
gtgttcaacgacctcactccgccacagtgtgccgcgctcctctcgtgtttcgtctttggc
gaaaagtcgaccacgcaaacccggctgaacgagacgctcgctgcaccactgcgcatcatg
caagagaccgcgcgtcgcatcgccaaagtttcgatcgaatcgaaattgccgttggtcgag
gaggagtacgtgtcgagcttcaaggtggagctcatggacctggtcatgcactggtgcaac
ggcgccaagtttgccgagatctgcaagatgaccgatgtcttcgagggaagtatcatcagg
tgtttcaggaggttgcaggagctgatcaggcagctggtgcaagcggcgaaagcgattggc
aatgagggattggctgagaagtttgagaagacgctggccatgctggagagggagggcagc
atcattttctcgccctcgctctatttgtag
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integrated database retrieval system
