Sporisorium graminicola: EX895_005620
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Entry
EX895_005620 CDS
T09331
Name
(RefSeq) hypothetical protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
sgra
Sporisorium graminicola
Pathway
sgra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EX895_005620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgra03019
]
EX895_005620
Messenger RNA biogenesis [BR:
sgra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
EX895_005620
mRNA degradation factors
5'-3' decay
Lsm complex
EX895_005620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SRA1
Hfq
PRIMA1
Motif
Other DBs
NCBI-GeneID:
40728515
NCBI-ProteinID:
XP_029737443
LinkDB
All DBs
Position
SGRAM_7:complement(join(484681..484872,484997..485112,485200..485338))
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AA seq
148 aa
AA seq
DB search
MDAQDIVSNIAFTTSGSLVDCVDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVERVFV
GNRYGDIARGVFLVRGENVVLMGEIDLDAEDEVPPSIAAPLPPSALPQLLAAKEAEAESK
AKSEAKKADILRIARGFCADKSGDGDMY
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atggacgctcaagatatcgtttcaaacatcgccttcaccacgtcggggtcgctcgtagac
tgcgtcgacaagaagatgctagtggtgttgagagatggcaagaaactcattggcgtcctg
cgatcgtatgatcagtttgccaatctcgtgctgcaagacacagtcgagagagtgtttgtc
ggtaaccgctacggagacattgcacgcggcgtcttcctcgtgcgaggtgaaaacgtggtc
ctgatgggcgagattgacctggacgcggaagacgaagttccgccctcgatcgcagcgcca
ttgccgccatcagccctacctcagctcctcgcggccaaggaggccgaagcggaatcaaaa
gcaaagagcgaagccaagaaggccgacatcctccgtatagcacgtggattctgcgcagac
aagagcggagacggcgacatgtactag
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