Sporisorium graminicola: EX895_005724
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Entry
EX895_005724 CDS
T09331
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sgra
Sporisorium graminicola
Pathway
sgra03013
Nucleocytoplasmic transport
sgra03015
mRNA surveillance pathway
sgra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sgra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EX895_005724
09122 Translation
03013 Nucleocytoplasmic transport
EX895_005724
03015 mRNA surveillance pathway
EX895_005724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgra03019
]
EX895_005724
03041 Spliceosome [BR:
sgra03041
]
EX895_005724
Enzymes [BR:
sgra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EX895_005724
Messenger RNA biogenesis [BR:
sgra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
EX895_005724
Spliceosome [BR:
sgra03041
]
Complex C
Other components
EJC/TREX
EX895_005724
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
EX895_005724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_19
Motif
Other DBs
NCBI-GeneID:
40728619
NCBI-ProteinID:
XP_029737547
UniProt:
A0A4U7KRE9
LinkDB
All DBs
Position
SGRAM_7:complement(join(786073..786618,786723..787252,787354..787456,788641..788749,788849..788871))
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AA seq
436 aa
AA seq
DB search
MSAIDNEDLIDYEEEVAVAPTSTNGAAATGNGAAATADADKDKKGSYVGIHSTGFRDFLL
KPELLRAISDLGFEHPSEVQQECIPQSILGMDVVCQAKSGMGKTAVFVLATLQQIEPVDG
EVSVLVLCHTRELAYQIRNEYARFTKYMPDVRTGVIYGGTPVAENQAMLKDKAKCPHILV
GTPGRMNALVRDKSLKVSGVKHFVIDECDKILEQVDMRRDVQDIFRATPHHKQVMMFSAT
LAKEVRPTCKKFMQNPLEIYVDDETKLTLHGLQQHYVRLEESAKNRKLNDLLDSLEFNQV
IIFVKSISRANELDKLLRECNFPSICIHGGLAQEERIKRYQQFKNFEKRILVATDIFGRG
IDVERVNVSISYDTPTDADSYLHRVGRAGRFGTKGLAIMFVSSDEDAEVLKQIQSRFEVA
VPELPETIEASSYMNA
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccatcgacaacgaagatcttatcgactacgaggaggaggtcgccgtcgcccct
acctccactaacggtgccgccgctaccggcaatggcgccgctgccaccgcggatgccgac
aaagacaaaaagggctcctacgtcggcatccactctacaggtttccgcgacttccttctc
aagcccgagctgctccgagccatctcggaccttggtttcgaacacccttccgaagtccag
caagaatgtatcccccagtcgatcctcggcatggacgtggtttgccaggccaaatcaggt
atgggtaagactgccgtcttcgtactcgccacgctgcagcagatcgagcccgtcgacggt
gaagtgtcagtgcttgtgctctgccacacgcgcgagctggcctaccagatccgcaacgag
tacgcccgcttcacgaaatacatgcccgatgtcagaacgggcgtgatctacggcggcacg
cccgtcgccgagaaccaggcgatgctcaaggacaaggccaagtgcccgcacatcctcgtc
ggcacgcccggacgtatgaacgcgctggtgcgcgacaagagcctcaaggtgtcgggcgtc
aagcactttgtcattgacgagtgcgacaagatcttggagcaggtcgacatgcgaagggac
gtgcaggacatcttccgtgccactcctcaccacaaacaggtcatgatgttctcggccacg
ctcgccaaggaggtgcgccctacgtgcaagaagtttatgcagaacccactcgaaatctac
gtcgacgacgagaccaagctgacgctgcacggtctgcagcagcactacgttcgcctggag
gaatcggccaagaaccgcaagctcaacgatctgctggattcgctcgagttcaaccaggtg
atcatctttgtcaaatccatctcgcgcgccaatgagctggacaagctgctgcgcgagtgc
aacttcccctcgatctgcatccacggcggcctggcgcaggaggagcgcatcaagcgctac
cagcagttcaagaacttcgagaagcgcatcctggtggctaccgacatctttggacgtggt
atcgacgtcgagcgtgtcaacgtctcgatcagttacgacacgcctacggatgcggacagc
tacctgcaccgtgtgggtagggctggacgtttcggtaccaagggtctggcgatcatgttt
gtctcgtcggacgaggacgccgaggtgctcaagcagatccagagccgtttcgaggtcgcg
gttccagagctgcccgagacgatcgaggccagttcgtacatgaacgcctga
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