Schistocerca gregaria (desert locust): 126316758
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Entry
126316758 CDS
T08688
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sgre
Schistocerca gregaria (desert locust)
Pathway
sgre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126316758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgre03019
]
126316758
03041 Spliceosome [BR:
sgre03041
]
126316758
03009 Ribosome biogenesis [BR:
sgre03009
]
126316758
03016 Transfer RNA biogenesis [BR:
sgre03016
]
126316758
Enzymes [BR:
sgre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126316758
Messenger RNA biogenesis [BR:
sgre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126316758
Spliceosome [BR:
sgre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126316758
Complex C
U4/U6.U5 tri-SnRNP related factors
126316758
Ribosome biogenesis [BR:
sgre03009
]
Eukaryotic type
Pre-60S particles
Helicases
126316758
Transfer RNA biogenesis [BR:
sgre03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126316758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
126316758
NCBI-ProteinID:
XP_049848810
LinkDB
All DBs
Position
Unknown
AA seq
1078 aa
AA seq
DB search
MTQGGGHLRLDGFGQTSMFFELNKMSGSNEETMQDGICENEQEQSMKKLKKECVDGSDEC
QSLSPYKKETPVKVEKISKAIVSDSSTMSYFDVLPSDMAETKPSPRAKSPNLFKDVKDNV
PIAEELLEERKKCQHEMCVPPGWQGDPWDENTPANPNRKAAKEFSFSLDPFQRVAIACLE
RNESVLVSAHTSAGKTVVAQYAIAMALRDGQRVIYTSPIKALSNQKYRDLHDEFKDVGLM
TGDISINSDASCLVMTTEILRSMLYRGSELLREVGWIIYDEVHYMRDKERGVVWEETLIM
LSRTVRFVFLSATIPNSREFASWIATLHSQPCHVVYTDFRPIPLQHYIYPAGSTSLHLVV
NERGQFIEDNFQRALANLISDGSSSEQKRRNLPDNVIQIVKVIMERNYEPVIVFAFSKKS
CETLATKINRNFNSKEEQEMVNTIFSSAIDTLPEEDKALPQVRSILPLLQRGIGIHHSGL
LPLLKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTSVRKFDGDDFRWISSGEYIQ
MSGRSGRRGIDDRGIVVMIVDEKMDPSVIKNIVKGQADTLTSSFYIGYNMLLNTLRVETL
NPEMMLRSSFHNFQHNRHLPELRRKIEELERQYREIQIENEEMLSQFYQLNQQASIIREY
INQKITQPDYILPFLQPGRLVRVRDGETKWGWGVTINYQKASSDSFSGLRKSSDLKRDSN
QKSASYVVDVLLACSPGVDYKSPDVLPRPAQEGETPDPLILPVLLGLIDGISQVKIRLPH
DLRQKSHRESVWKLVKEVHRRFPDGIPLLDPVEDMEIAEDEFIDNLNRLERIERALLDNP
LFRRRSTDPEVDKQYQLYLDKIKLGAQIKELKEKAYDSNQIVLQDELKSMMRVLRRLGYT
TKDNIVETKGRVACEINAADELVLTELIFSGFFNSLNIPMVAAMLSCFIFQDKTEGTKKV
PEAIAVHFNKLLEVVRKIGQIEQECKLPTDPEKYVSKFKPTLAEVFYEWAKGSRFIDVCK
LTAVFEGSIIRAMRRLEELLRQLVNASKSIGNTELETKFSETILTIKRGIVFTASLYL
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgacccagggtggtggacatctaaggctagacggctttggtcaaacgtcgatgtttttt
gaacttaataaaatgagcgggtcaaatgaagagactatgcaagatggcatatgcgaaaat
gagcaagaacagtcgatgaagaagttgaagaaggaatgtgtcgatggatcggacgagtgc
cagtcattgagcccttataaaaaagagaccccagttaaagttgagaaaatcagcaaagcg
atagtaagcgattcatctacgatgagttattttgacgttttgccttctgatatggcggaa
accaagccgagtccaagggcgaagagtcctaatttgttcaaggatgtcaaagacaacgtt
ccaattgcagaagagttattggaggaacgaaaaaagtgccagcatgaaatgtgtgtgcca
cctgggtggcaaggcgatccttgggacgaaaatacgccggctaatcccaacagaaaggcg
gccaaggagttctccttttcgcttgatccatttcagcgcgtcgcgatagcctgtctggag
cgcaatgagagcgtgctcgtttccgcgcacacctccgcgggaaagacagttgtagctcaa
tacgcaattgcgatggcgctgcgcgacggtcagcgcgtcatctacacatcccccatcaag
gcgctgtcgaaccagaagtaccgcgacctgcacgacgagttcaaggacgtcggcctgatg
acgggggacatttccatcaacagcgacgcgagttgtttggtgatgaccactgaaattttg
cgctcgatgctgtaccgcgggtccgagctactgagggaggtggggtggatcatctacgac
gaggtgcattacatgcgcgacaaggagcgcggcgtggtgtgggaagagacgctaattatg
ctttctagaacggttaggtttgtttttttgagcgctacaattccaaattcgcgcgaattt
gcgagttggattgcgacgctgcattctcagccgtgtcacgtcgtctacacggactttcgc
ccgataccgctccagcactatatatacccggctggatccaccagcctgcacttggtcgtc
aacgagcggggtcagtttattgaggacaacttccagagggcgctggccaacctcatatcg
gacggctcgagttcggagcagaagaggaggaatttgccggacaacgtgattcagatagtt
aaggtgatcatggagcgcaactacgagccggtgatcgtgtttgcgttttcaaaaaagtcg
tgtgaaacattggcgacaaaaatcaatcgcaatttcaactccaaagaggagcaagagatg
gtgaacaccatcttctccagcgccattgatacgctgccggaagaggacaaggcgctcccg
caagtgcgcagcatcctgccgctgctccagcgaggcataggaattcaccactcgggactt
ttgccgctcttgaaggaggtcattgaaattttgttccaagaggggcttatcaagtgcctg
tttgcgaccgagaccttttccatcgggctcaacatgccggctaagaccgtggttttcacg
tccgtgaggaagttcgacggcgacgatttccgctggatttccagcggagagtacatccaa
atgtccggacggtccgggcgtcgtggtatagacgaccggggcatcgtcgtgatgatcgtc
gatgagaagatggatccttcggtgatcaagaacatagtgaagggacaagcggacacactc
acctcctctttttatatcgggtacaacatgcttttgaatacgcttcgcgtggagacgctc
aaccccgagatgatgcttcgctcttcgttccacaacttccaacacaatcgacacctcccc
gagctgcgtcgcaagatagaagagttggagcggcaatacagggagattcagattgagaac
gaagagatgttgagtcaattctatcagctcaaccagcaggcgagcatcatacgagagtac
atcaaccagaaaataacgcagcctgattacatcttgccgttcttgcagcccggcaggttg
gtgagggtgagagacggagaaacgaagtggggctggggcgtgacaatcaactaccaaaag
gcgtcaagcgacagcttttcgggtctcagaaagtcgtcggatttgaaacgcgattcaaac
caaaaatcggcgtcttacgtagttgacgttttgctcgcgtgctcccccggcgtggactac
aaaagcccagacgtcctcccgcgtccggcgcaagagggcgagacgccggatcccctgatt
ttgcccgtgcttttgggcctgatagacgggatttcccaggtcaaaattcggctcccgcac
gacttgcgtcagaaatcgcaccgagagtccgtgtggaagctagtgaaggaggtccatcgc
cgcttcccggacggaattccgctactggatccggtggaagacatggagatcgccgaagac
gaattcatcgacaacctgaatcggctggaaagaatcgaacgcgccctgctcgacaacccg
ctcttcaggcgccgctccacggatccagaggtcgacaagcaataccagctgtatctggac
aaaatcaagttgggcgctcaaatcaaagagctgaaagagaaggcttacgacagcaaccaa
atcgtcttgcaagacgagctgaagtccatgatgcgggtgctgcgtcgcctgggctacacc
acaaaggacaacatcgtggaaacgaagggaagggtggcgtgcgaaatcaatgcggcggac
gaactcgtgctcaccgaactgatattttctggattcttcaactcccttaacattcccatg
gtcgccgccatgttgtcctgcttcatattccaagacaaaaccgaaggaaccaaaaaagta
cccgaagctatcgccgttcacttcaacaaactgctggaagtcgtgaggaaaatcggccaa
atcgaacaagaatgcaaactgccaaccgatccggaaaaatacgtcagcaagttcaagccc
actctcgccgaggtcttctacgaatgggccaaagggtcgcgcttcatagacgtttgcaag
ctgacggccgtttttgaaggaagcatcatccgagccatgcgaaggctcgaagagctactc
cgtcagctggtgaacgcgtccaaatcaatcggaaacacggagctagaaaccaaattctca
gaaacaattttaacgatcaaaaggggcattgtgtttactgcttctctgtacttgtaa
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integrated database retrieval system
