Schistocerca gregaria (desert locust): 126349666
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Entry
126349666 CDS
T08688
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sgre
Schistocerca gregaria (desert locust)
Brite
KEGG Orthology (KO) [BR:
sgre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgre03016
]
126349666
Enzymes [BR:
sgre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
126349666
Transfer RNA biogenesis [BR:
sgre03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
126349666
Prokaryotic type
tRNA splicing ligases
126349666
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
DUF6471
Motif
Other DBs
NCBI-GeneID:
126349666
NCBI-ProteinID:
XP_049858406
LinkDB
All DBs
Position
1:409220574..409280346
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AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLEKISPSCWKIKKGFQPNMNVEGVFYVNNHLEKLMFDELRNACRPGMV
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMGDPKSVVSPGGVGFD
INCGVRLLRTNLHERDVQPVKEQLAQSMFDHIPVGVGSKGIIPMNARDMEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASKMGIEMKGQICVMIHSGSRGFGHQVATDALVAMERAMKRDNIETNDRQLACAHIM
SPEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKQFRMTPDDLDMHVIYDVSHNIAKVE
EHYIDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
RETFGSTCHGAGRALSRAKSRRNLDYQDVLNKLEEMGISIRVASPKLVMEEAPESYKNVT
DVVDTCHEAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgttaggcagtacaatgaagagcttaagtatttggagaagatttcgccaagttgt
tggaaaattaagaaaggtttccaaccaaacatgaatgttgaaggcgtgttctatgttaat
aatcacctggaaaaattgatgttcgatgagcttcgcaatgcatgtcggcctggcatggtt
ggaggctttctacctggtgtaaaacaaatagcgaatgtggctgccttgccgggtattgta
ggaagatcagttggtcttccggatgtgcattccggctatggttttgcgataggtaacatg
gcagcttttgatatgggtgatccaaaatcggtagtgtctccaggaggagtgggtttcgat
ataaactgtggtgtgaggctcttgaggacgaatcttcatgaaagggatgttcagcctgtt
aaagagcagttagctcagagcatgttcgatcatattcctgttggtgttggttcaaaggga
ataatccctatgaatgcaagagatatggaagaggcactggaaatgggaatggattggtca
cttcgtgaaggttatgtatgggctgaagataaagaacactgtgaggagtacggccgcatg
ttgaatgctgatccaagtaaagtcagcatgagagcaaagaagagaggactgcctcagcta
ggtaccttgggagcagggaatcactatgctgagatacaggtagttgatgagatctacgat
aagtgggctgccagtaaaatgggaatagaaatgaaaggacagatatgtgtcatgatccat
tcaggaagcagaggctttgggcatcaggttgctacagatgcattggttgccatggaaaga
gctatgaaacgtgataacattgagaccaatgacagacagctagcatgtgcacatattatg
tccccagagggtcaggattacctcaaagctatggctgcagctgcaaattttgcatgggtt
aacaggagctcaatgacatttctcagtcggcaggcttttgctaaacaattccggatgaca
cctgatgacctagatatgcatgtaatttatgatgtttcccacaacattgctaaagttgag
gaacattatattgatggtaaacagaagacactgttggtacacaggaagggctcaactcga
gctttccctccccaccatccactaattcctgtggattaccagttgacaggacaaccagtg
ttgattggaggtaccatggggacctgcagttatgttttaactggaactgaacagggtatg
cgagaaacctttggctcaacctgccatggtgccggtagagccctttctcgggcgaagtca
cgacgtaacttggactaccaagatgtcctcaataaactagaagaaatgggtatctcaatt
cgtgttgcttctccaaaattggtcatggaagaggcacctgaatcatacaagaatgtgact
gatgttgttgatacatgccatgaagcaggtattagcaagaagtgtatcaaattacgacca
attgctgttattaaaggctga
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