Streptomyces graminofaciens: SGFS_025950
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Entry
SGFS_025950 CDS
T09325
Name
(GenBank) Pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sgrf
Streptomyces graminofaciens
Pathway
sgrf00040
Pentose and glucuronate interconversions
sgrf01100
Metabolic pathways
sgrf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
SGFS_025950
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SGFS_025950
Enzymes [BR:
sgrf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
SGFS_025950
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
BBC31301
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Position
complement(2892125..2893105)
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AA seq
326 aa
AA seq
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MRALLLALLLGTTAIPAGGSATAQTPAPVPLAETSPSGFAAVNALGQNGTTGGVAGPTVT
ATTTEQFLEYIDTTGPLVIRVQGTIDITSKQGVRPNKTIIGVGSSGVINGGGLDFYRSYN
VIVRNIRFTNAEDDAVNVGQESHHIWIDHNEFVAPVDGAVDIVRGSQYVTVSWNWFNKTD
KSMLLGHSDSNSGQDTGKLKVSIHHNFFDGSRQRHPRVRFGEPVHVYNNYYKGNAIYGVA
STMNAGVLVEGNYFENAPHPCYSASGYDESGPGRLLQRNNVFNGSGACETNGTVVEPRTY
YAYTLDAPADVPALVRAGAGVGRTGG
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgagggctctcttactcgccctgctgctcggcacgacggcgatcccggccggaggaagc
gccaccgcgcagaccccggcgccggtgccgctcgcggaaacgtccccctccggcttcgcc
gcggtcaatgcgctcggtcagaacggcaccaccggcggagtggcgggcccgaccgtcacc
gccacgacgaccgagcagttcctggaatacatcgacaccacgggtccgctggtcatccgg
gtccagggcaccatcgacatcaccagcaagcagggcgtacgccccaacaagacgatcatc
ggggtcggttcctcgggggtcatcaacggcggcggcctggacttctaccgttcctacaac
gtcatcgtgcggaacatccggttcaccaatgcggaggacgacgccgtcaacgtaggccag
gagtcgcaccacatctggatcgaccacaacgagttcgtcgcgccggtcgacggcgcggtc
gacatcgtccgcggctcccagtacgtcaccgtctcctggaactggttcaacaagaccgac
aagagcatgcttctcggtcactccgacagcaactccggccaggacaccgggaagctgaag
gtctccatccaccacaacttcttcgacggctcccggcagcgccatccgcgcgtacggttc
ggtgagcccgtgcacgtctacaacaactactacaaggggaacgccatttacggcgtcgcg
tcgaccatgaacgcgggggtgctggtcgaagggaactacttcgagaacgcccctcacccc
tgctactccgcgagcgggtacgacgagtcgggaccgggccgcctgctgcagcggaacaac
gtgttcaacgggtccggcgcgtgcgagaccaacggcaccgtggtcgagccgcgcacctac
tacgcgtacacgctggacgccccggccgacgttcccgctctcgtgcgggccggagcgggc
gttggaagaaccggcggatga
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