Streptomyces graminofaciens: SGFS_032860
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Entry
SGFS_032860 CDS
T09325
Name
(GenBank) AraC family transcriptional regulator
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sgrf
Streptomyces graminofaciens
Pathway
sgrf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SGFS_032860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sgrf03000
]
SGFS_032860
03400 DNA repair and recombination proteins [BR:
sgrf03400
]
SGFS_032860
Enzymes [BR:
sgrf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
SGFS_032860
Transcription factors [BR:
sgrf03000
]
Prokaryotic type
Helix-turn-helix
AraC family
SGFS_032860
DNA repair and recombination proteins [BR:
sgrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SGFS_032860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
DUF4429
DUF6233
Motif
Other DBs
NCBI-ProteinID:
BBC31992
LinkDB
All DBs
Position
complement(3711412..3712791)
Genome browser
AA seq
459 aa
AA seq
DB search
MEDGDTRYEAVRSRDGRFDGEFFFAVRTTGIYCRPSCPAVTPKRHNVRFYASAAAAQHAG
FRACRRCRPDAVPGSAEWNVRADVVGRAMRLIGDGVVDREGVAGLALRLGYSARQVQRQL
TAEVGAGPVALARAQRAHTARVLLQTTRLPVTEIAFAAGFASVRQFNDTIRTVYDASPTG
LRAAAPRRDTPGTPATGIPLRLAYRGPYQSTALFETLAAETVTGIEEMTGPPGRRVYRRT
LRLPYGTGIAAVDERPGGQGGGGWLDARLRLTDPRDLTTAVQRLRRLLDLDADPYAVDER
LGADPRLAPLVAARPGLRSPGAADPEEFAVRALVGRGEAERLVQAHGKRLDAPCGTLTHL
FPEPSALADADGSLGALATALADGSPRLDVGADRDEAERALLGLPGMDARTAAVIRARAL
GDPDVAPPGEDVPDTWRPWRSYALQHLRTTHRERYSRER
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggaggacggagacaccaggtacgaggcggtgcggagcagggacggccggttcgacggg
gagttcttcttcgccgtccggacgaccgggatctactgccggcccagctgcccggcggtg
acgccgaagcgacacaacgtccgcttctacgcgagcgccgccgccgcacagcacgccggc
ttccgcgcctgccgccgctgccgccccgacgccgtacccggctcggccgagtggaacgtc
cgcgcggacgtcgtcggccgggccatgcggctcatcggcgacggcgtcgtcgaccgggag
ggcgtcgcgggcctcgccctacggctgggctacagcgcccgccaggtccagcggcagctc
accgccgaggtcggcgccggccccgtcgcgctcgccagggcgcagcgggcgcacaccgcg
cgtgtcctgctccagaccacgcggctgcccgtcacggagatcgcgttcgcggccgggttc
gccagcgtgcgccagttcaacgacacgatccggaccgtgtacgacgcctcccccaccggt
ctgcgggccgccgcaccccgccgggacaccccgggcacccccgccacgggcatccccctg
cggctcgcgtaccgggggccgtaccagtccaccgccctcttcgagaccctcgccgccgag
acggtcaccgggatcgaggagatgaccggcccacccgggcgccgcgtctaccggcgcacc
ctgcggctgccgtacggcaccgggatcgccgccgtcgacgaacgccctgggggccaaggg
ggcggcggttggctcgacgcccggctccggctcaccgatccccgtgacctcaccaccgcc
gtacagcggctgcgccggctcctcgacctcgacgccgacccgtacgccgtggacgagcgt
ctcggcgccgatccccggctcgccccgctcgtcgccgcccgccccggcctgcgctcgccc
ggcgcggccgaccccgaggagttcgccgtacgcgccctcgtgggacggggagaggccgag
cggctcgtacaggctcacgggaagaggctggacgcgccctgcgggacgctcacgcatctc
ttccccgagccgtccgccctcgcggacgccgacgggtccctcggcgcgctcgccaccgcc
ctcgccgacggcagcccccgcctcgacgtgggtgccgaccgcgacgaggcggagcgggca
ctgctcggactgccgggcatggacgcccgtaccgccgccgtgatccgcgcccgagcgctc
ggcgacccggacgtggcacctccgggcgaggacgtcccggacacctggcggccctggcgc
tcctacgcccttcaacacctcaggaccacacatagggagcggtacagccgtgagcggtga
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