Streptomyces graminofaciens: SGFS_033040
Help
Entry
SGFS_033040 CDS
T09325
Name
(GenBank) Rhamnogalacturonase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sgrf
Streptomyces graminofaciens
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
SGFS_033040
Enzymes [BR:
sgrf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
SGFS_033040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
DUF4397
NOMO1-like_2nd
PEGA
EMC7_beta-sandw
Motif
Other DBs
NCBI-ProteinID:
BBC32010
UniProt:
A0ABN5VFZ9
LinkDB
All DBs
Position
3736905..3738584
Genome browser
AA seq
559 aa
AA seq
DB search
MSSSTDRPLGRRGFVIGATASAAGAALAGPLAGTARAASFGYTDDGSNYVIDTGASLVFK
ISKSNGDLTSLVYRGTEYQGYDGKNSHIESGLGSSTVTIAQSGSTILVSVTYGTLKHYYA
ARSGENNVYLWTNKADTSVSATRYIVRVKKGLFLNDEPDSYTYAPTTIEASDVFAKSDGQ
TRSKHYSKLRVIDYNYVGWTTGSVGLYVVRSNHEKASGGPFYRSLLRHQSADGGGLYEIL
YYGQNQTEAQRFGLQGPYVIAFTDGGAPSSSLFPGTLTTSWADSLGLSGYTAASGRGRVA
GVGITGRNTSYAYTVGLANSAAQYWGSARSSDGYFSIAGILPGTYTLTVYKSELAVYTTS
VTVTAGGTTTLNSFAIPSTNDPSNAGVIWRINDWNGTPSGFKNADLMTYAHPSDSRAAAW
TGNVVIGSGTETSAFPCYIWKDVNSGLLVYFKLTAAQAAAAHTLRIGVTTAYANGRPQVV
VNDTWTSAIPSPPTQPDTRSLTNGSYRGNNHTFTYSVPASAWQTDTSQYNVLKINVVSGS
GSTSYLSAGTSIDAIDLLS
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcatccaccgacagaccgctcggccgccgcggcttcgtcatcggcgcgaccgcg
agcgccgccggagccgccctcgccggaccgctggccggaaccgcgcgggccgcgtccttc
ggctacacggacgacggctcgaactacgtgatcgacaccggcgccagcctggtcttcaag
atcagcaagtccaacggcgacctgacctcgctggtctaccggggcacggagtaccagggc
tacgacggcaagaactcgcacatcgagtccggcctcggcagctcgaccgtcaccatcgcg
cagtccggttcgacgatcctggtctccgtcacctacggcacgctgaagcactactacgcg
gcccgcagcggcgagaacaacgtctacctgtggaccaacaaggccgacacctcggtcagc
gcgacccgttacatcgtgcgcgtcaagaagggcctgttcctcaacgacgagcccgactcg
tacacctacgcgccgaccacgatcgaggcctcggacgtcttcgcgaagtccgacggccag
acccgctcgaagcactactccaagctccgggtgatcgactacaactacgtcggctggacg
accggcagcgtcggcctgtacgtcgtgcgctccaaccacgagaaggcctccggcggcccc
ttctaccgctcgctgctgcgccaccagagcgcggacggcggcggtctgtacgagatcctg
tactacggccagaaccagaccgaggcccagcgcttcggcctccagggcccgtacgtcatc
gccttcaccgacggcggcgcgccctcctcgtcgctgttcccgggcacgctgaccacctcg
tgggcggactcgctcggcctctccgggtacacggccgcgagcggccggggccgggtggcg
ggcgtcggcatcaccgggcggaacacgtcgtacgcgtacacggtcgggctcgccaactcg
gctgcgcagtactggggttcggcccgttcctccgacggctacttctccatcgccggcatc
ctgccggggacgtacacgctcacggtctacaagtccgagctggccgtgtacacgacctcg
gtgacggtcacggcgggtgggacgaccactctgaactcgttcgcgatcccgtcgacgaac
gatccgtccaacgcgggcgtgatctggcggatcaacgactggaacggcacaccgagcggc
ttcaagaacgccgatctgatgacgtacgcgcatccgtcggactcccgggccgccgcctgg
accggcaatgtggtcatcggcagcggcaccgagacctcggccttcccctgctacatctgg
aaggacgtgaacagtggtctcctcgtctacttcaagctgaccgcggcccaggccgccgcc
gcgcacaccctgcggatcggtgtgacgacggcctacgccaacggccggccccaggtcgtc
gtcaacgacacctggacctcggccatcccctccccgcccacccagccggacacgcgctca
ctgacgaacgggtcctaccggggcaacaaccacacgttcacctacagcgtcccggcgtcc
gcctggcagacggacacgagtcagtacaacgtgctgaagatcaacgtggtgagcgggtcg
gggtcgacctcctatctcagcgcggggacgtcgatcgacgcgatcgacctcctcagctga
DBGET
integrated database retrieval system
