Streptomyces graminofaciens: SGFS_037160
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Entry
SGFS_037160 CDS
T09325
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sgrf
Streptomyces graminofaciens
Pathway
sgrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGFS_037160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgrf03019
]
SGFS_037160
03400 DNA repair and recombination proteins [BR:
sgrf03400
]
SGFS_037160
Enzymes [BR:
sgrf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SGFS_037160
Messenger RNA biogenesis [BR:
sgrf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SGFS_037160
DNA repair and recombination proteins [BR:
sgrf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SGFS_037160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
AAA_22
SWI2_SNF2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
BBC32422
LinkDB
All DBs
Position
complement(4239909..4242068)
Genome browser
AA seq
719 aa
AA seq
DB search
MDVLELRAEADAILAELVGDPGGSARLREDQWQAVAALVEDRRRALVVQRTGWGKSAVYF
VATALLRRRGSGPTVIVSPLLALMRNQVESAARAGIRARTINSANPEEWDSIHEEVERGE
TDVLLVSPERLNSVDFREQMLPKLASTTGLLVVDEAHCISDWGHDFRPDYRRLRAMLAEL
APGVPVLATTATANARVTADVAEQLGTGAGEALVLRGTLERESLRLGVVRLPDAAHRLGW
LAEHLDELPGSGIVYTLTVAAAEEATAFLRQAGFRVASYTGRTENADRLQAEADLLDNRV
KALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHADVLLLPGKEDEAI
WRYFADTAFPPEEQVRQTLSALAAAGRPLSVPALEAQVDLRRTRLETMLKVLDVDGAVRR
VKGGWISTGEQWVYDSERYAWVARQRAAEQQAMRDYVSTSRCRMEFLRLQLDDEGAAPCG
RCDNCAGAWADSSVSAGTLTGAAKELDRPGVEIEPRRMWPTGMPALGIDLKGRIPVNEQC
ATGRALGRLSDIGWGNRLRPLLAENAPDGPVPDDVLRAAVAVLADWARSPGGWAPDVPDA
SARPVGVVAVPSLARPQLVGSLAEGIATVGRLPFLGTLTYTGPGGAHAARRSNSAQRLKS
LFGAFTVSEELAGALAGSPGPVLLVDDCTDSGWTLAVAARLLRRAGGEGVLPLVLAAAG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggacgttctggagctgcgcgccgaagccgatgccatcctcgccgagctcgtcggtgac
ccggggggctcggcgcggctgcgcgaggaccagtggcaggcggtggcggccctggtcgag
gaccgtcggcgggcgctggtggtgcagcgcaccggctggggcaagtcggcggtgtacttc
gtcgccacggccctgctgcgccgacgtggctccggccccacggtgatcgtctcgccgctg
ctggcgctcatgcgcaaccaggtcgagtcggcggcgcgggcgggcatccgcgcacgcacc
atcaactcggccaacccggaggagtgggactccatccacgaggaggtcgagcgcggcgag
accgacgttctcctcgtcagcccggaacgcctcaactctgtcgattttcgcgagcagatg
ctgcccaagctggcgtccacgaccggtctgctggtggtcgacgaggcgcactgcatctcc
gactggggccacgacttccgccccgactaccggcggctgcgggcgatgctcgccgagctc
gcccccggtgtgcccgtgctggccaccaccgcgacggccaacgcgcgggtcaccgcggat
gtggccgagcagctgggcaccggcgccggtgaggccctggtgctgcgcggcacgctggag
cgggagagcctgcgcctgggagtggtccggttgccggacgccgcacaccgcctgggctgg
ctcgccgagcacctggacgagctgccgggctccggcatcgtctacaccctcacggtggcc
gccgccgaggaggccacggccttcctgcggcaggcaggcttccgggtggcctcctacacg
gggcgcacggagaacgccgaccggttgcaggccgaggccgatctgctggacaaccgggtc
aaggcgctggtcgcgacctcggcgctgggcatgggcttcgacaagccggatctgggcttc
gtggtccatctcggctcgccttcgtcgccgatcgcctactaccagcaggtgggacgcgcg
ggccgtggagtcgagcacgccgatgtgctgctgctgccgggcaaggaggacgaggccatc
tggcgctacttcgccgacaccgccttcccgcccgaggagcaggtccggcagaccctctcg
gccctggccgccgcgggacggccgctctccgtgccggcgctggaggcccaggtcgacctc
cggcgcacccgtctggagaccatgctgaaggtcctggacgtcgacggcgcggtgcggcgg
gtgaagggcggctggatctccaccggcgaacagtgggtctacgactccgagcggtacgcc
tgggtcgcccgccagcgcgcggccgagcagcaggccatgcgcgactacgtgagcacgtcc
cggtgccggatggagttcctgcgcctgcagctggacgacgagggggcggccccctgcggc
cggtgcgacaactgcgcgggagcctgggccgactcctctgtgtcggccggcacgctgacg
ggcgcggcgaaggagctggaccgcccgggggtggagatcgagccccgccggatgtggccg
acggggatgcccgcgctcggcatcgacctcaagggccgtatcccggtcaacgagcagtgc
gccaccgggcgtgccctgggcaggctctcggacatcggctggggcaaccggctgcgcccg
ctgctggccgagaacgcgcccgacgggccggtccccgacgacgtcctgcgggccgcggtg
gcggtcctcgccgactgggcgcgctctccgggcggctgggccccggatgtcccggatgcc
tccgcccggccggtgggagtcgtcgccgtgccgtccctggcccgcccgcagctggtcgga
tccctcgccgaagggatcgcgaccgtcggccgcctccccttcctgggcaccctgacctac
accgggccgggcggtgcgcacgcggcacgacgcagcaactccgcgcagcgcctgaagtcg
ctgttcggcgccttcacggtctccgaggaactcgccggtgccctggcgggctctcccggc
ccggtcctgctcgtggacgactgcaccgactccggctggaccctcgcggtcgcggcccgt
ctgctccgccgggcaggcggcgaaggggttcttccgctggtcctcgccgcggcgggctga
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