KEGG   Streptomyces graminofaciens: SGFS_037880
Entry
SGFS_037880       CDS       T09325                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
sgrf  Streptomyces graminofaciens
Brite
KEGG Orthology (KO) [BR:sgrf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sgrf03400]
    SGFS_037880
Enzymes [BR:sgrf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SGFS_037880
    5.6.2.6  RNA 3'-5' helicase
     SGFS_037880
DNA repair and recombination proteins [BR:sgrf03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    SGFS_037880
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr WH3_Lhr WH4_Lhr DEAD WH2_Lhr Helicase_C ResIII AbiEi_4 DUF6406 AAA_25 PhoH
Other DBs
NCBI-ProteinID: BBC32494
LinkDB
Position
4337185..4342080
AA seq 1631 aa
MVSSAHRALEGFSPATRGWFTGAFSAPTAAQAGAWRAIGEGSDVLVVAPTGSGKTLAAFL
AALDQLTSSPPPADPRKRCRVLYVSPLKALAVDVERNLRSPLTGIRQESVRLGLPEPEVK
VGIRSGDTPAAERRALSTRPPDILITTPESLFLMLTSATRDALTGLETVILDEVHAVAGT
KRGAHLALSLERLDELLPRPARRIGLSATVRPVDEIARYLSPQRKVEIVQPPSGKEFDLS
VVVPVEDLGELGGSPVAEGNEGAERPSIWPHVEERIADLVQAHRSTIVFANSRRLAERLC
NRLNEIAYERATGEPLDEHHAPAELMGGSGAAQGAPPVLARAHHGSVSKEQRALVEEDLK
AGRLPAVVATSSLELGIDMGAVDLVIQVESPPSVASGLQRVGRAGHQVGAVSTGVVFPKY
RGDLVQAAVVTERMRSGSIESLRVPANPLDVLAQQLVAMTSMDTWQVDDLLAAVRRAAPF
ASLPESAFTAVLDMLAGRYPSDAFAELRPRVVWDRIAGTITGRPGAQRLAVTSGGTIPDR
GLFGVFLAGADPKKGGGRVGELDEEMVYESRVGDVFTLGTSSWRIEDITRDRVLVSPAPG
VPGRLPFWKGDQLGRPLELGRALGAFLREVGSLSQEDARLRLVAAGLDAWAADNVLSYLA
EQREACGHVPDDRTIVVERFRDELGDWRVVVHSPFGAQVHAPWALALGARLSERYGMDAQ
VMHADDGIVLRLPDADLMGLDLLDQEPMKAGMEYDAEQAPVGAADVAFDKGEVDQIVTDQ
VGGSALFASRFRECAARALLLPRRSPGKRTPLWQQRQRAAHLLQVASEFGSFPIVLEAVR
ECLQDVFDVPGLAELMGDIESRKVRLVEVTTPEPSPFARSLLFGYVAQFLYEGDSPLAER
RAAALSLDSRLLAELLGQAELRELLDAEVLVELERELRWLTEDRRVKDMEGVADLLRLLG
PLTDTELAERGAEPQWAGELAGARRAIRVRIAGTDHWAAIEDAGRLRDALGTALPVGVPE
AFTEPVKDPLGDLLARYARTHGPFTSVAAAARFGLGTAVTEGALHRLAASGRVVQGEFHP
AGIGQEWCDAAVLRRLRRRSLAALRHELEPVSPAALAQFLPQWQHVGSGHGLRGIDGLVR
AIEQLQGASVPASALEKLVLPSRVANYTPSMLDELTATGEVVWAGAGALPGKDGWVSLYL
ADAAPVLLPPPHPLELTALHQSVLDTLSGGYGLFFRQIADQIRATTHPEVTDPQLADAIW
DLAWSGRLTNDTLTPMRSLLGSGRTAGSTAHRAKRTIPRGRYGSLTAAARPQSRTGPPTV
AGRWSLLPANEPDPTVRAHALARTLLDRHGVVTRGAVAAEGVEGGFSATYRVLSVFEESG
QARRGYVVEGLGAAQFAMDGAVDRLRAVANARERGEPLSIVSSNGLAGGHGSAPNPTPSP
AAWDAFPDAPDLHSPDPSGFDTPTTSTPASTPDGSYGSYGSYGDHDSYGRQGSRTRPRPT
PSPRAVVLAAADPANAYGAALPWPEPPTEAGHKPGRKAGSLVVLVDGELTLYMERGGKTL
LAWPAAPDDSPMDDPRLRPAAEALASAARAGSLGTVTVERVNGTSALTSPYGTLLEGAGF
IATPRGLRIRA
NT seq 4896 nt   +upstreamnt  +downstreamnt
atggtcagctccgcacatcgagccctcgagggcttctcgcccgcgacccgcggctggttc
acgggggcgttctccgcgcccaccgcggcccaggccggggcgtggcgagccatcggcgag
ggctcggacgtgctggtggtcgccccgaccggttccggcaagaccctggccgcgttcctc
gccgcgctggaccagctgacgtcgagccctcccccggccgacccgaggaagcgctgccgg
gtgctgtacgtgtcaccgttgaaggccctcgcggtggacgtggagcggaacctgcgcagt
ccgctcaccggcatccgtcaggagtccgtacgccttgggctgcccgagcccgaggtgaag
gtgggcatccgctccggtgacaccccggccgccgagcgccgcgcgctgtccacgcgcccc
ccggacatcctgatcaccaccccggagtcgctgttcctgatgctgacgtcggccacgcgc
gacgcgctcacaggcctggagacggtgatcctggacgaggtgcacgcggtcgccggcacc
aagcgtggcgcgcacctcgccctctccctggagcggctcgacgagctcctgcccaggccc
gcgcgccgcatcggcctctccgcaaccgtgcgtcccgtcgacgagatcgcgcgctatctc
tcgccgcagcgcaaggtggagatcgtgcagcccccgtccggcaaggagttcgacctctcg
gtggtcgtcccggtcgaggacctgggcgagctgggcggctccccggtcgccgagggcaac
gagggcgcggagcgaccgtcgatctggccgcacgtcgaggagcggatcgccgatctcgtg
caggcacaccgctccacgatcgtgttcgccaactcccgccgcctcgcggagcgcctgtgc
aaccggctcaacgagatcgcgtacgagcgggccaccggcgagcccctggacgagcaccac
gccccggcggagctgatgggcggctcgggcgcggcacagggcgcgcccccggtgctcgcc
cgggcccaccacggctcggtctccaaggagcagcgcgccctggtcgaggaggatctcaag
gcgggccggctgccggccgtggtcgccacctccagcctcgaactgggcatcgacatgggc
gcggtggacctcgtcatccaggtcgagtccccgccctccgtggcctccgggctccagcgc
gtgggccgcgcgggacaccaggtgggcgcggtctccacgggcgtggtgttccccaagtac
cgcggcgatctggtccaggccgcggtcgtcaccgagcggatgcgcagcggctccatcgag
tccctcagggtccccgccaaccccctggacgtgctggcacagcagctcgtcgccatgacc
tcgatggacacctggcaggtggacgacctgctcgccgccgtccgccgcgccgcgcccttc
gcctcgctcccggagtccgcgttcacggccgtcctcgacatgctcgcgggccgctatccg
tccgacgccttcgcggagctgcgcccgcgcgtggtgtgggatcggatcgccggcacgatc
accgggcgtcccggcgcccaacgcctggcggtcacgtccgggggcacgatcccggaccgc
ggcctcttcggggtcttcctcgccggtgccgaccccaagaagggcggtggccgcgtcggc
gagctggacgaggagatggtgtacgagtcccgggtcggggacgtcttcaccctgggcacc
agttcgtggcgcatcgaggacatcacacgcgaccgggtgctggtctcccccgcgccgggt
gtcccgggccgactccccttctggaagggcgaccagctcggacggccgctcgaactgggc
cgtgcgctgggcgcgttcctgcgcgaggtgggctccctgtcccaggaggacgcccgtctg
cgtctggtggcggcaggccttgacgcctgggccgcggacaacgtcctgtcctacctggcc
gaacagcgcgaggcctgcggccacgtccccgacgaccgcaccatcgtcgtcgaacgcttc
cgcgacgagctgggtgactggcgggtcgtcgtccactccccgttcggcgcccaggtccac
gccccgtgggcactcgcgctgggcgcccgcctctccgagcgttacggcatggacgcccag
gtcatgcacgccgacgacggcatcgtgctgcgcctgcccgacgccgacctgatgggcctg
gacctgctcgaccaggagcccatgaaggcgggcatggagtacgacgccgaacaggccccg
gtcggcgcggccgacgtcgccttcgacaagggagaggtcgaccagatcgtcaccgaccag
gtcggtggctccgcgctgttcgcgtcccgcttccgtgagtgcgccgcccgcgcgctactg
ctcccccgccgtagtccaggcaagcgcacgcccttgtggcagcagcggcagcgggcggcc
catctgctccaggtggccagcgaattcggctctttcccgatcgtcctggaggcggtccgc
gaatgcctccaggacgtcttcgacgtccccggcctcgctgagctgatgggcgacatcgag
tcccgcaaggtccgcctcgtcgaggtcaccaccccggagccctcccccttcgcccgctcc
ctactcttcggctacgtcgcccagttcctgtacgagggcgactccccgctcgccgagcgc
cgcgccgccgccctgtcgctggactcccggctgctcgcggagctgctgggccaggcggag
ctgcgcgagctgctcgacgccgaggtgctcgtcgagttggagcgggagctgcgatggctc
accgaggaccggcgggtcaaggacatggagggtgtcgccgacctgctgcggcttctgggc
cccctcactgacaccgagttggccgagcgcggcgccgagccgcagtgggccggggaactg
gccggggcccgccgcgccatccgggtccggatcgccggcaccgaccactgggcggcgatc
gaggacgcgggccgcctgcgcgacgcgctcggtacggccctgcccgtcggtgtcccggag
gcgttcaccgagccggtcaaggacccgctcggcgacctcctcgcccgatacgcacgcacg
cacggcccgttcacctcggtcgcggcggccgcccgcttcggcctcggcacggccgtcacc
gaaggcgcgctccatcggctggcggcgagcggccgagtcgtccagggtgagttccaccct
gcgggcatcggccaggagtggtgcgacgccgccgtgctgcgccgtctgcgccgccgctcc
ctggcggccctgcggcacgagctggagccggtgtcgcccgccgcgctcgcacagttcctt
ccccaatggcagcacgtgggcagcggccacgggctgcgtggcatcgacggtctggtgcgc
gcgatcgaacagctccagggtgcctcggtgcccgcgtccgctctggagaagctggtcctg
ccgtccagggtcgccaactacacgccgtcgatgctcgacgaactcacggccaccggcgag
gtcgtgtgggcgggcgccggagccctccccggcaaggacggctgggtctcgctgtacctg
gcggacgcggccccagtgctcctcccgcccccgcatccgctcgaactgacggccctccac
cagtccgtcctcgacaccctctccgggggctacggcctgttcttccgtcagatcgccgac
cagatccgggccaccacacaccccgaggtcaccgacccccaactcgccgacgccatctgg
gacctggcctggtcgggccgactcaccaacgacacgctcacccccatgcgttccctgctc
ggctcgggccgcacggccggctccacggcccaccgcgccaagcgcacgatcccgcgcggc
cggtacggctccctgaccgccgccgcgcgcccccagtcccgtaccggcccacccaccgtc
gcgggccgctggtccctgctgccggccaacgagcccgaccccaccgtccgtgcccacgct
ctcgcccgcacactcctggaccggcacggcgtcgtcacccgaggcgccgtggccgccgag
ggcgtggaagggggcttctccgcgacataccgcgtcctgtccgtcttcgaggagagcggc
caggcacggcgcggctatgtggtcgaagggcttggcgcggcacagttcgcgatggacggc
gcggtggaccgactgcgagcggtggccaacgcacgcgagcggggcgagcctctgtcgatc
gtaagttcgaacggcctcgccgggggccatggctcagcgccgaacccgaccccgtctccg
gctgcctgggacgccttccccgacgcccctgacctccacagccccgacccctcgggcttc
gacactccgaccacctccacccctgcctccacccccgacggcagctacggcagctacggc
agctacggcgatcacgactcgtacggccgccaaggcagccgtacgcgcccccgccccacc
ccctccccccgagccgtcgtcctggccgccgcggacccggcgaacgcctacggcgctgcc
ctcccctggcccgagccgcccaccgaggccggacacaaaccgggccgcaaggcaggctcc
ctggtcgtcctggtcgacggtgaactgaccctctacatggagcgtggcggaaagaccctg
ctggcctggcccgccgccccggacgacagccccatggacgacccacgcctccgcccggcc
gccgaagccctggcgtcagcagcccgggcgggctccctcggcacggtcactgtggaacgg
gtgaacggcacctccgccctcacctccccgtacggcactctcctggaaggagcgggtttc
atcgcgaccccccgtggcttgcgcatccgggcctga

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