Streptomyces graminofaciens: SGFS_038100
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Entry
SGFS_038100 CDS
T09325
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sgrf
Streptomyces graminofaciens
Pathway
sgrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGFS_038100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgrf03019
]
SGFS_038100
03016 Transfer RNA biogenesis [BR:
sgrf03016
]
SGFS_038100
Enzymes [BR:
sgrf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SGFS_038100
Messenger RNA biogenesis [BR:
sgrf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SGFS_038100
Transfer RNA biogenesis [BR:
sgrf03016
]
Prokaryotic type
tRNA degradation factors
SGFS_038100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH-I_KHDC4-BBP
DUF2017
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
BBC32516
LinkDB
All DBs
Position
complement(4376636..4378855)
Genome browser
AA seq
739 aa
AA seq
DB search
MENETHYAEAVIDNGSFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKNPKDQ
LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQV
VATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHSELEDA
VFDMVVAGRTLEDGDVAIMMVEAEATEKTIQLVKGGAEAPTEEVVAAGLEAAKPFIKVLC
KAQADLASKAAKPTGEFPVFLDYQDDVLEALTAAVKDELSQALTIAGKQEREAELDRVKG
LAAEKLLPQFEGREKEISAAYRSLTKSLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPR
VHGSAVFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSP
KRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVP
LKAPVAGIAMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGAEITIEDDGTIYIGAQVGSQAEAARATINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL
IPVIEGEGDDDEKKDDADK
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacgagacccactacgccgaggccgtcatcgacaacggctccttcggcacccgc
accatccgcttcgagacgggtcgcctggccaagcaggccgccggctccgccgtggcgtac
ctggacgacgacaccatggtgctgtcggccaccaccgcctccaagaaccccaaggaccag
ctcgacttcttccccctgacggtggacgtcgaggagcggatgtacgccgccggcaagatc
cccggcagcttcttccgccgtgagggccgcccctccgaggacgccatcctcacctgccgc
ctgatcgaccgcccgctgcgcccgtccttcaagaagggcctgcgcaacgagatccaggtc
gtcgccacgatcatggcgctcaaccccgaccacctgtacgacgtcgtcgcgatcaacgcc
gcgtccgcgtccacgcagctggccggtctgcccttctccggcccgatcggcggcgtccgc
gtcgcgctgatcaacggccagtgggtggccttcccgacgcactccgagctcgaggacgcc
gtcttcgacatggtcgtcgcgggccgcaccctcgaggacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgagaagaccatccagctggtcaagggcggtgccgaggcgccg
accgaggaggtcgtcgccgccggtctggaagccgcgaagcccttcatcaaggtcctctgc
aaggcccaggccgacctcgcctcgaaggccgccaagccgaccggcgagttcccggtcttc
ctcgactaccaggacgacgtcctggaggcgctcaccgccgccgtcaaggacgagctctcc
caggccctcaccatcgcgggcaagcaggagcgcgaggccgagctggaccgcgtcaagggt
ctggccgccgagaagctgctcccgcagttcgagggccgcgagaaggagatctccgccgcg
taccgctcgctgaccaagtccctggtccgtgagcgcgtcatcaaggacaaggtccgcatc
gacggccgtggcgtcacggacatccgtacgctcgccgccgaggtcgaggccatcccgcgc
gtgcacggttccgcggtgttcgagcgtggcgagacccagatcctgggcgtcaccaccctc
aacatgctccgcatggagcagcagctggacacgctgtcgccggtgacgcgcaagcgctac
atgcacaactacaacttcccgccgtactccgtcggcgagaccggccgcgtcggctccccg
aagcgccgcgagatcggccacggcgccctcgccgagcgcgccatcgtgccggtcctgccg
acgcgcgaggagttcccctacgcgatccgccaggtgtccgaggcgctcagctcgaacggc
tcgacgtccatgggctcggtctgcgcctccaccatgtcgctgctgaacgcgggtgtgccc
ctgaaggcccccgtcgccggtatcgccatgggtctgatctcccaggagatcaacggcgag
acgcactacgtcgccctcaccgacatcctcggtgcggaggacgccttcggtgacatggac
ttcaaggtcgccggcaccaaggagttcgtcaccgccctccagctggacaccaagctggac
ggcatcccggcctccgtcctggccgcggccctcaagcaggcccgtgacgcccgcctccac
atcctcgacgtgatgatggaagcgatcgacacgccggacgagatgtccccgaacgccccg
cggatcatcacggtcaagatcccggtggacaagatcggtgaggtcatcggccccaagggc
aagatgatcaaccagatccaggaggacaccggcgccgagatcacgatcgaggacgacggc
accatctacatcggtgcccaggtcggctcgcaggccgaggccgcccgcgccacgatcaac
ggcatcgccaacccgaccatgccggaggtcggcgagcgctacctgggcacggtcgtgaag
acgaccaccttcggcgcgttcgtgtcgctgctgccgggcaaggacggtctgctgcacatc
tcgcagatccgcaagctcgccggcggcaagcgcgtggagaacgtcgaggacgtgctcggg
gtgggcgccaaggtccaggtcgagatcgccgagatcgactcgcgcggcaagctctccctg
atcccggtcatcgagggtgaaggcgacgacgacgagaagaaggacgacgccgacaagtga
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integrated database retrieval system
