Streptomyces graminofaciens: SGFS_038410
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Entry
SGFS_038410 CDS
T09325
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sgrf
Streptomyces graminofaciens
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgrf03016
]
SGFS_038410
Enzymes [BR:
sgrf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SGFS_038410
Transfer RNA biogenesis [BR:
sgrf03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SGFS_038410
Prokaryotic type
SGFS_038410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C
TruB_C_2
PseudoU_synth_2
DKCLD
Motif
Other DBs
NCBI-ProteinID:
BBC32547
LinkDB
All DBs
Position
complement(4418277..4419191)
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AA seq
304 aa
AA seq
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MTEQRQKNTTPDGLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVE
KATKMLGHLALTEKEYLGTIRLGQTTLTDDAEGEITASSDASKVTRDAVDAGIAKLSGDI
MQVPSKVSAIKIDGVRSYKRARDGEDFEIPARPVTVSSFAVYDVRDAVAEDGTPVLDLVV
SVVCSSGTYIRALARDLGADLGVGGHLTALRRTRVGPYKLDSARTLDQLQEELTVMPIAE
AAAAAFPRWDVDARRARLLLNGVRLDMPEEYADAGAVAVFDPAGRLLGLVESLKGKAKSL
AVFG
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagcagcgccagaagaacaccacgcccgacggacttgtcatcgtcgacaagccg
tcgggcttcacttcgcacgacgtcgtcgccaagatgcgcggcatcgcgcggacgcgcagg
gtcgggcacgcggggacgctcgaccccatggccaccggtgtgctcgtcctcggggtggag
aaggcgaccaagatgctcggtcacctcgccctcaccgagaaggagtacctggggaccatc
aggctcgggcagacgacgctcaccgatgacgccgagggcgagatcacggcgtcgagcgac
gcgtcgaaggtcacccgcgacgccgtcgacgccgggatcgccaagctgagcggcgacatc
atgcaggtgccgtccaaggtcagcgccatcaagatcgacggcgtgcggtcctacaagcgg
gcccgggacggcgaggacttcgagatccccgccaggcccgtcaccgtctcctccttcgcg
gtgtacgacgtccgggacgccgtcgccgaggacggcacccccgtgctcgacctggtggtg
tcggtggtgtgctcatccgggacgtacatccgggcgctcgcccgtgacctgggcgcggac
ctcggggtcggcgggcatctgaccgcgctgcgccgcacccgcgtcgggccgtacaagctg
gactcggccaggacgctggaccagctccaggaggagctgaccgtgatgccgatcgcggag
gccgccgcagccgcgttcccccgctgggacgtggacgccaggcgggcccggctgctgctg
aacggcgtgcggctggacatgcccgaggagtacgcggacgccggtgccgtggccgtcttc
gatccggccgggcggctgctggggctcgtggagagcctgaagggcaaggccaagagcctg
gccgtcttcggctga
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