Streptomyces graminofaciens: SGFS_043610
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Entry
SGFS_043610 CDS
T09325
Name
(GenBank) putative RNA polymerase sigma-F factor
KO
K03090
RNA polymerase sigma-B factor
Organism
sgrf
Streptomyces graminofaciens
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgrf03021
]
SGFS_043610
Transcription machinery [BR:
sgrf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SGFS_043610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
DUF7343
MarR_2
NirdL-like_HTH
Sigma70_ECF
HTH_24
MarR
IF2_N
HTH_3
HTH_Crp_2
HTH_AraC
GerE
DUF4142
Motif
Other DBs
NCBI-ProteinID:
BBC33067
LinkDB
All DBs
Position
5010731..5011909
Genome browser
AA seq
392 aa
AA seq
DB search
MRDEERGTRELPAEAGGAPWPGGVVGSGEGGGPDGLSHLADGVDGIPEQARPHPEDDSPA
VAGAARRAEPAGGEEREALSGVRHDPEGAVTSTTSSRGRTGASPARAQSGAGGSVTAGGT
MSEHERDDAPGAQRVQVTQHNPQDRSGARAMFVELRKLQEGSTEYAELRNKLVRMHLPLV
EHLARRFRNRGEPLDDLTQVATIGLIKSVDRFDPERGVEFSTYATPTVVGEIKRHFRDKG
WAVRVPRRLQELRLALTTATAELSQQHGRSPTVHELAQKLAISEEEVLEGLESANAYSTL
SLDVPDTDDESPAVADTLGAEDEALEGVEYRESLKPLLEDLPPREKRILLLRFFGNMTQS
QIAQEVGISQMHVSRLLARTLAQLREKLLVEE
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
gtgcgggacgaagaacgcggcacacgggagcttcccgcggaggccgggggcgcaccctgg
ccgggcggagtcgtgggctcgggagagggcggcggccccgacgggctgtcgcacctggcg
gatggcgtcgacggcatccccgagcaggcccggccgcacccggaggacgactcccccgca
gtggccggggcggctcgccgggcggagccggccggcggcgaggagcgcgaggcgctctcc
ggcgtacgacacgatccggagggtgccgtgacgagcaccacgtcctcacgaggacggact
ggggcctcccccgctcgagcacagtcgggagctgggggatcggtgacggcgggcgggact
atgagcgagcacgagcgagacgacgcacctggcgcgcagcgcgtccaggtcacccagcac
aaccctcaggaccgcagtggcgcacgggcgatgttcgtcgagctgcgcaaactgcaagag
ggcagcaccgagtacgcggagctgcgcaacaagctggtccggatgcatctgccgctcgtg
gagcacctcgcgcgccggttccgcaatcgcggcgagccgttggacgacctgacccaggtc
gccaccatcggcctgatcaagtcggtcgaccgtttcgacccggagcgcggggtggagttc
tccacgtacgcgacgccgacggtcgtcggcgagatcaagcggcacttccgcgacaagggc
tgggcggtgcgggtcccgcgcaggctccaggagctgcgtctcgcgctgaccacggcgacg
gcggagctctcgcagcagcacggccgctcccccaccgtccatgagctggcccagaagctg
gccatctcggaggaggaggtcctggagggcctggagtccgcgaacgcgtattccacgctg
tccctggacgtccccgacacggacgacgagtccccggccgtcgcggacaccctgggcgcg
gaggacgaggcgctggagggcgtcgagtaccgcgagtcgctcaagcccctcctggaggac
cttccgccccgcgagaagcggatcctgttgcttcgcttcttcggcaacatgacccagtcg
cagatcgcgcaggaggtgggcatctcccagatgcacgtctcccgcctgctggcgaggacc
ctggcccagctgcgcgagaagctgctggtggaggagtag
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