Streptomyces graminofaciens: SGFS_044280
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Entry
SGFS_044280 CDS
T09325
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sgrf
Streptomyces graminofaciens
Pathway
sgrf03420
Nucleotide excision repair
sgrf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SGFS_044280
03430 Mismatch repair
SGFS_044280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgrf03400
]
SGFS_044280
Enzymes [BR:
sgrf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SGFS_044280
DNA repair and recombination proteins [BR:
sgrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SGFS_044280
MMR (mismatch excision repair)
Other MMR factors
SGFS_044280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BBC33134
LinkDB
All DBs
Position
complement(5079659..5083225)
Genome browser
AA seq
1188 aa
AA seq
DB search
MAAASLSGVSAHINDAEQLKELLGIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARV
VWLVGTGQVAPEQVLGLTFTNKAAGELAERVRKALVKAGITDPDVIDPDNPPGEPVISTY
HAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLRESPGPYPSLTRSFPDLVSDLLA
LDSELSEHLVRPEELRAYDAELLRELEGAKLSNADLRKVPEAAAARRELAELVGRYRAAK
RERDLLDFGDQIALSAGLARLPEVGRILRDEFRVVLLDEYQDTSVAQRVLLAGLFGGGTG
HPVTAVGDPCQAIYGWRGASVANLDDFPEHFAHADGTRAERQSLSENRRSGGRLLDLANG
LAEPLRAMHAGVEALRPAPGAERDGMVRCALLSTHAEELAWIADSIAHLVRTGKEPGEIA
VLCRTATDFAEIQGALVARDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLL
TGPRWRIGPRDLALLGRRARLLVSHARVGADDDPDRRLAAAVEGVDPSEVISLADALDTF
LELPFETQREDDGLPFSPDARVRFARLAAELRDLRRSLADPLMDVLHRVLAVTGLEVELS
ASPHALAARRRETLSNFLDTAASFAANSAGDATLLAFLAFLRTAVQYEKGLDNALPGGEN
TVKVLTAHKSKGLEWDVVAVPGLVTGNFPSTQGREKWTAQGKVLPHGLRGDSDTLPDIEA
WDSRGLKAFQEAMKGHQHTEELRLGYVTFTRPRSLLLGSGHWWGPTQKRPRGPSDFLQAL
HDHCAAGYGEIEVWADQPEEDAESPALHATTADHAWPLPLDDTALARRRAAAETVLAHLE
RAASLPGAAPDPRPHENPEWPPPPEEDFPDDSIEDFPEEDASDWDTWTADRPAETPEIPA
DPEEPLHARVPHPDPHTPAIPHARRHPAEHDLTPEEARTLASWDRDLDALTGELLRARAN
VTDVPLPASLTASQVLRMAADPDGFAQELARPMPRPPQPAARRGTRFHAWVEARFEELTL
PMLEPDELPGSEAEIADERDLEALKDAFERTPYAQRTPHRVEAPFQLAIAGRVVRGRIDA
VYESRDGDGTTYEIVDWKTSRSLTADPLQLALYRLAWAEQKGVPLETVKAAFLYVRTGEV
VHHEALPDRAALERLLLEEPGVDGPQTPLDGPEPFADEPPDGDVGGGR
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
gtggccgccgctagcctctctggggtgtccgcccatatcaacgatgccgagcagctcaag
gagctcctcggcatcccgttcaccccggagcagacggcctgcatcatcgcgccgcccgcc
cctcaggtgatcgtggccggagccgggtcgggcaagaccacggtgatggccgcgcgcgtg
gtgtggctggtcggcaccggacaggtcgcccccgaacaggtgctcggcctgacgttcacg
aacaaggcggcgggcgaactcgccgagcgcgtgcgcaaggccctcgtcaaggcgggcatc
accgacccggacgtcatcgaccccgacaacccgccgggcgagccggtcatctccacctac
cacgccttcgcgggccgcctcctcaccgaccacgggctgcgcatcggcctggagcccacc
tctcggctcctcgccgacgccacgcgctaccaactcgccgcgcgcgtgctccgcgagtcc
ccgggcccgtacccgtcgctgacccgctctttccccgacctggtcagcgacctcctcgcg
ctcgactccgaactctccgagcacctcgtacgccccgaggaactgcgcgcctacgacgcc
gaactgctgcgcgagctggagggcgccaagctcagcaacgccgacctgcgcaaggtcccc
gaggcggccgccgcccggcgtgaactcgccgagctggtgggccgctaccgcgcggccaag
cgcgagagggacctcctcgacttcggcgaccagatcgccctgtcggccggcctcgcccgg
ctacccgaggtggggcgcatcctgcgggacgagttccgggtggtcctgctcgacgagtac
caggacacctcggtggcccaacgtgtcctgctggcgggcctgttcggcggcggcaccggc
catcccgtgacggcggtcggcgacccctgccaggcgatctacggctggcgcggcgcctcc
gtggccaacctcgacgacttccccgagcacttcgcccacgcggacggcacccgagcggag
cgtcagtccctcagcgagaaccgccgcagcggcggccgcctcctcgacctcgccaacggc
ctcgcagagcccctgagggccatgcacgcgggcgtggaggccctcaggcccgccccgggc
gccgagcgcgacggaatggtccgctgcgccctgctgagcacccacgccgaggaactggcc
tggatcgccgactcgatcgcccacctcgtgcgcaccggcaaggaacccggcgagatcgcg
gtcctgtgccgcacggcgaccgacttcgcggagatccagggcgccctcgtcgcacgcgac
gtcccggtggaggtcgtcggtctctccgggctgctccacctccccgaggtcgccgacctc
gtcgccgtctgcgaggtcctccaggaccccggagccaacgcctcgttggtccgtctgctc
acgggcccgcgctggcgcatcggcccgcgcgacctcgccctcctcgggcgccgggccagg
ctgctcgtgtcccacgcgcgcgtgggcgccgatgacgaccccgaccgtcggctcgccgca
gccgtcgagggcgtggacccgtccgaggtgatctccctcgccgacgccctcgacacgttc
ctcgagctgccgttcgagacccagagggaggacgacgggctgcccttctcgccggacgcg
cgcgtacgcttcgcccgcctcgccgccgaactgcgcgacctgcgccgttccctcgccgac
cccctcatggacgtgctccaccgggtgctcgccgtcaccggcctggaggtcgagctctcc
gcgtccccgcacgcgctggccgcccgccgccgcgagacgctctccaacttcctggacacg
gccgcgtccttcgccgccaacagcgccggagacgccaccctgctcgcgttcctggccttt
ctgcgcacggccgtccagtacgagaaaggcctcgacaacgccctgccgggtggcgagaac
accgtcaaggtgctcaccgcccacaagtccaagggcctggagtgggacgtcgtcgcggtc
cccgggctggtcaccggaaacttcccgagcacccagggccgcgagaaatggaccgcgcag
ggcaaggtgctcccgcacgggctgcgcggcgactccgacaccctccccgacatcgaggcc
tgggactcccggggcctgaaggccttccaagaggccatgaagggccaccagcacaccgag
gaactccgcctcggctacgtcacgttcactcgcccccgctccctgctcctcggctccggc
cactggtggggccccacccagaaacgcccccgcggaccgtccgacttcctccaggccctc
cacgaccactgcgccgccggatacggcgagatcgaggtctgggccgaccagcccgaggag
gacgccgagagccccgccctgcacgcgaccaccgccgaccacgcctggccgctccccctc
gacgacacggcactggcccgccgccgggcggccgccgagaccgtactggcacatctggag
cgcgcggcctccctccccggggccgcccccgatcctcggccccacgaaaacccggagtgg
ccgcctccgccggaggaagactttccggacgacagcatcgaggactttcccgaggaggac
gcctccgactgggacacctggacggcggaccgcccggcggaaacgccggagatcccagcg
gaccccgaagagcccctccacgcgcgcgtgccccacccggacccgcacacgcccgccatc
ccgcacgcccgacggcatccggccgagcacgacctcacccccgaggaggcccgcaccctc
gcctcctgggaccgcgacctggacgccctcaccggggagctcctgcgcgcccgcgcgaac
gtcaccgacgtacccctgcccgcgtcgctcaccgcctcgcaagtgctgcgcatggcggcc
gacccggacggtttcgcgcaggaactcgcacgccccatgccgcgccctccacaaccggca
gcgcgccggggcacccgcttccacgcgtgggtcgaggcccgcttcgaagagctgacactg
cccatgctggagcccgacgagttgcccggcagcgaggccgagatcgccgacgaacgggac
ctggaggccctcaaggacgccttcgaacgcactccgtacgcgcagcgcacgccccaccgc
gtcgaggcgcccttccagctcgcgatcgccggacgcgtcgtacgcggccgcatcgacgcc
gtctacgagagccgcgacggcgacgggacgacgtacgagatcgtcgactggaagaccagc
cgctcccttaccgccgaccctctccagctcgcgctctaccgactcgcctgggccgagcag
aagggcgtgcccctggagaccgtgaaggccgctttcctgtacgtgcgcaccggcgaggtc
gtacaccacgaggctctgcccgaccgggccgcgctggaacggctgctgctggaggagccg
ggcgtcgacgggccgcagacgcctctggacgggcccgagcccttcgcggacgaaccgccc
gacggggatgtcggtgggggccgatag
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