Streptomyces graminofaciens: SGFS_076870
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Entry
SGFS_076870 CDS
T09325
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sgrf
Streptomyces graminofaciens
Pathway
sgrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGFS_076870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgrf03019
]
SGFS_076870
03009 Ribosome biogenesis [BR:
sgrf03009
]
SGFS_076870
Enzymes [BR:
sgrf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SGFS_076870
Messenger RNA biogenesis [BR:
sgrf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SGFS_076870
Ribosome biogenesis [BR:
sgrf03009
]
Prokaryotic type
rRNA processing factors
SGFS_076870
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BBC36393
UniProt:
A0ABM7FIT2
LinkDB
All DBs
Position
8553106..8557158
Genome browser
AA seq
1350 aa
AA seq
DB search
MLEPTEPTESAQGSEHNTPSDTLPPRRRRRAASRPAGPPTAEAEATAETVAPAIPAAQSE
DLVTNEADEAVEVEETEEVVAEAPAPVEEAAPAGRTRRRATRRASAPAGAPKEAEAAEVV
ETVAPVAAAETVASAAEPAPVEEAAPAARTRRRATRRASAPAGAPKAAETVESTEAVEVA
EAVVEAPAAEAAPVEEAAPAARTRRRATRRAAAPAGEPKAAEAVEEDVPVAEETAVPVEA
AEVAEDVAEDAAPRRTRRRATRRVSAPAGEPESAAVAEEPVAEPAAPAVAAAPAVEDEEA
APRRARRRVATRKAAGGFSAPAAPVAEEAPARPARPAVAVFQAPVFTEPMFQTPERAAAQ
AAAEAEEATEVVEAPEAAQPARFGGYGEEETGGSRRRRRRRGEPAEAEPVAAAVTVDEVE
ETDEAEDIEETDESFEAEESAEGDEFGEEESTGSRRRRRRGGRRRRRGESAEAGEGEEFA
AEQAAQDAEDAAEQAEEDAEDEADEREDAGGSGSSSSRRRRRRRRRAGDSGTEAEAASDD
PERTVVKVREPRPKAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARR
EAVERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFI
DIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVS
LPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRD
VERLQEQWEDIQKKAKSGNAPTLLYGEPDMTVRVVRDIFNEDFTKVIVSGDEAWETIHGY
VSHVAPDLAERLSKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDV
NTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRL
LECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMDQPSAVG
GGGGGKRRKRGRGGAEHDHEHVAEAVEAAEVVEPLEAVESEAEVAAEVAEPVALPGPEFE
PDEDLYSSVAEAEAAVTRGRSRRRATRRASAPSGAPRQRDTVTVADVVEERAPKSRQAAE
AEPVAVEDPVVEAPAPSEPVEEAAPKGRTRRRATRKVSAPAGAPAEAEVAVVTVAEPVAA
PEPVAEPVAEAVAEPVAEVVAESAAPARPRRRAVRKATAPTASEEAAVVVVPSAGAESPA
AEAEAEVSVSEEVAEVVEVAEAPAKKAARKTAKKATAKKAATKKTVAAKKTAAKKVTAKK
AATKKTAAKKTTAAAEQASPATVTASTDEG
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgaacccacagagtccgctcagggctccgaacacaacacgccgagc
gacaccctgccgccgcgccgccgccgtcgcgccgcgtcgcgcccggcgggaccgcccacg
gccgaggccgaggccactgccgagaccgtcgcgccggccataccggccgcccagtccgag
gacctcgtgacgaacgaggcggacgaggccgtagaggtcgaggagaccgaagaggtcgtg
gccgaggcgcccgcccccgtcgaggaggccgcgcccgccgggcgtacgcgccgtcgtgcg
acgcgccgggcgtccgcaccggccggtgcgccgaaggaggcggaggccgccgaggtcgtc
gagaccgtggcgccggtcgccgccgccgagaccgtcgcttctgccgcggagcccgccccc
gtcgaggaggccgcccccgccgctcgtacgcgtcgtcgtgcgacccgtcgtgcgtcggcg
cccgccggtgcgcccaaggcggccgagaccgtcgagtccaccgaggccgtcgaagtggcc
gaggccgtcgtcgaggcgcccgctgccgaggccgcgccggtcgaggaggcagccccggct
gctcgtacgcgtcgtcgtgccacccgccgtgcggccgcgcccgccggtgagccgaaggcc
gccgaggccgtggaggaggacgttccggtggctgaagagactgccgtgccggtcgaggcg
gccgaggtcgccgaggacgtggccgaagacgccgccccgcgtcgtacgcgtcggcgtgcc
acgcgccgggtctccgcgcccgccggtgagcccgagagcgccgccgtcgcggaggagccc
gtggcggagcccgccgctcccgctgtcgccgccgcgccggccgtcgaggacgaggaggcc
gcgccgcgccgtgcccgcaggcgggtcgccacccgcaaggccgccggtggtttctccgcg
cccgccgcgccggtcgccgaggaggccccggcccggcccgcgcggcccgccgtggccgtg
ttccaggcgcccgtcttcaccgagccgatgttccagacgcccgagcgcgccgccgcccag
gccgcggcagaggcggaggaggccacggaggtcgtcgaggctcccgaggccgcccagccc
gcacggttcggtgggtacggcgaggaggagaccggcggatcgcgtcgtcgccgtcgccgt
cggggcgagcccgccgaggcggagcccgtggccgccgccgtgaccgtcgacgaggtcgag
gagaccgacgaggcggaggacatcgaggagacggacgagtctttcgaggccgaggagtcc
gccgagggcgacgagttcggcgaggaggagtccaccgggtcgcgtcgtcgccgtcgccgg
ggcggccgtcgccgtcgccggggcgagtccgccgaggccggtgagggcgaggagttcgcc
gccgagcaggccgcgcaggacgccgaggacgccgccgagcaggcggaggaggacgccgag
gacgaggcggacgagcgcgaggacgccggtgggtccggctccagcagcagccgccgtcgc
cgtcgccgtcgtcgtcgcgccggtgactcgggcaccgaggccgaggccgcgtccgacgac
cccgagcgcacggtcgtcaaggtccgcgagccccgcccgaaggcggagccctccgacgag
gtgcagtccatcaagggctcgacccgtctggaggccaagaagcagcgccgccgcgagggc
cgcgagcagggccgccgccgcgttccgatcatcaccgaggccgagttcctggcccgccgc
gaggccgtcgagcgcgtcatggtcgtccggcagagcggcgagcgcacccagatcggcgtc
ctcgaggacaacgtgctcgtcgagcactacgtcaacaaggagcagtcgacctcgtacgtc
ggcaacgtctacctgggcaaggtccagaacgtgctgccctcgatggaggccgccttcatc
gacatcggcaagggccgcaacgccgtcctgtacgccggtgaggtcaacttcgaggcgctg
ggcatggccaacgggccgcggcgcatcgagtccgcgctgaagtccgggcagtccgtcctc
gtgcaggtcaccaaggacccgatcgggcacaagggcgcccgtctgaccagccaggtgtcg
ctgccgggccgctacctcgtgtacgtccccgagggctcgatgaccggcatcagccgcaag
ctgcccgacaccgagcgggcccggctgaagaccatcctcaagaagatcgtccccgaggac
gcgggcgtcatcgtgcgcaccgccgccgagggcgcgagcgaggacgagctgcgccgggat
gtcgagcggctccaggagcagtgggaggacatccagaagaaggcgaagagcggcaacgca
ccgacgctgctctacggcgagccggacatgaccgtccgtgtcgtccgcgacatcttcaac
gaggacttcaccaaggtcatcgtgagcggcgacgaggcgtgggagaccatccacggatat
gtctcgcacgtcgcgcccgacctcgccgagcggctgtcgaagtggacctccgaggtcgac
gtcttcgcgacgtaccggatcgacgagcagctcgccaaggcgctggaccgcaaggtctgg
ctgcccagcggcggttcgctggtgatcgacaagaccgaggccatgatcgtggtcgacgtc
aacaccggcaagttcaccggccagggcggcaacctcgaggagacggtcaccaggaacaac
ctggaggcggccgaggagatcgtgcgccagctgcggctgcgcgacctcggcggcatcgtc
gtcatcgacttcatcgacatggttctggagtccaacagggatctggtgctgcggcgcctc
ctggagtgcctgggacgcgaccgtacgaagcaccaggtcgccgaggtcacgtcgctgggc
ctggtccagatgacccgcaagcgggtcgggcaggggctgctggagtcgttctccgagacc
tgtgtccactgcaacggccgtggtgtgatcgtccacatggaccagccgtccgcggtcggt
ggcggcggaggcggtaagcgccgcaagcgtgggcgtggcggcgccgagcacgaccacgag
catgtggcggaggccgtcgaggcggccgaggtcgtggagccgctggaggccgtcgagtcc
gaggccgaggtggccgccgaggtcgccgagccggtcgcgctgcccgggccggagttcgag
ccggacgaggatctgtacagcagcgtcgccgaggcggaggccgcggtcacgcgcggccgt
tcgcggcgccgtgcgacccggcgggcctcggcgccctcgggtgcgccccggcagcgggac
accgtgaccgtggccgatgtcgtcgaggagcgggcaccgaagtcgcggcaggccgccgag
gccgagccggtcgcggtggaggacccggtcgtggaggcgccggcgccgagcgagcccgtg
gaggaggccgcgcccaaggggcgtacgcgtcgtcgtgcgacccggaaggtgtccgctccg
gcgggcgcgccggccgaggccgaggtggccgtggtgacggtggcggagccggtggcggcg
cccgagcccgtcgcggagcccgtcgccgaggcggttgccgagcccgtggccgaggtggtc
gccgagagcgccgctccggctcgtccgcggcggcgtgcggtgcgcaaggccacggcaccg
accgcgtccgaggaggcggccgtcgtggtcgttccgtcggctggggcggagagcccggcg
gccgaggctgaggctgaggtttcggtctccgaggaggtcgctgaggtcgttgaggtcgct
gaggcgcccgccaagaaggccgcgcggaagacggccaagaaggcgacggcgaagaaggcc
gcgacgaagaagaccgtggcggccaagaagacggctgcgaagaaggtcacggcgaagaag
gccgcgacgaagaagacggcggcgaagaagacgacggccgcggcggagcaggcttcgccg
gccacggtcacggcttccaccgacgaaggctga
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