Streptomyces graminofaciens: SGFS_085400
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Entry
SGFS_085400 CDS
T09325
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sgrf
Streptomyces graminofaciens
Pathway
sgrf03030
DNA replication
sgrf03430
Mismatch repair
sgrf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SGFS_085400
03430 Mismatch repair
SGFS_085400
03440 Homologous recombination
SGFS_085400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgrf03032
]
SGFS_085400
03400 DNA repair and recombination proteins [BR:
sgrf03400
]
SGFS_085400
Enzymes [BR:
sgrf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SGFS_085400
DNA replication proteins [BR:
sgrf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SGFS_085400
DNA repair and recombination proteins [BR:
sgrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SGFS_085400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
BBC37246
LinkDB
All DBs
Position
9497323..9500862
Genome browser
AA seq
1179 aa
AA seq
DB search
MSKPPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMSHIAMSDHGNLHGAYDFFHTAKKS
GITPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAADATGLHNLFRL
SSDAYAEGWLQKWPRMDKETISKWSEGLIASTGCPSGELQTRLRLGQFDEALKAASEYQD
IFGKDRYFLELMDHGIEIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYASEATAHDALLCI
QTGKNLSDPDRFKFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLVAEQIDTAGMFEARN
LMPKFDIPEGYTEVSWFREETMRGMQRRFPGGIPDDRVKQVEYEMDTIISMGFPGYFLVV
ADFIMWAKKQGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFLNPERISMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIDLNGITDPSHPRYSEAGEIRSMYENEPDVKKVIDTAKGVEGLVRQMGVHAAG
VIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIMDDAVKMVKS
NKGIDIDLLSLPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMDSHTNYALRKNKLQEITPIHKELEEPLEEVLAVTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPEELAKNFTIFQSGAQKNGYSDEAIQALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAIYLNECRRMGIKVLPPNVNES
VHNFAAQGDDVILFGLEAVRNVGTNVVESIIRSRKAKGKYASFPDYLDKVEAVACNKRTT
ESLIKAGAFDTMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGEEETSEPGFGL
DVTFSEDEWEKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTGGEHADGAVV
TIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDAVVFVKGRL
DKREDVPRLVAMELQVPDLSNAGTNAPVILTIPATRVTPPMVNRLGEILSHHKGDSEVRI
RLQGPTKTTVLRLDRHRVKPDPALFGDLKVLLGPSCLAG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaagccgccgttcacgcacctgcacgtccacacccagtactcgctgctggacggt
gccgcgcggctcaaggacatgttcaacgcgtgcaacgagatgggcatgagccatatcgcc
atgtccgaccacggcaacctccacggcgcgtacgacttcttccacacggcgaagaagtcc
ggaatcaccccgatcatcggcatcgaggcgtacgtcgcccccgagtcccggcgcaacaag
cgcaagatccagtggggccagccgcaccagaagcgggacgacgtctccggttccggtggt
tacacccacaagacgatctgggcggccgacgcgacgggcctgcacaacctcttccgcctc
tcctcggacgcgtacgccgagggctggctgcagaagtggccccgcatggacaaggagacc
atctccaagtggtccgagggcctcatcgcctccaccggctgtccctccggcgagctccag
acccggctgcgcctcggccagttcgacgaggcgctgaaggcggcctccgagtaccaggac
atcttcggcaaggaccgttacttcctggagttgatggaccacggcatcgagatcgagcac
cgggtccgcgacggcctcctggagatcggcaagaagctcggcatccccccgctggtcacc
aacgactcgcactacacctacgcgagcgaggcgaccgcccacgacgccctgctgtgcatc
cagaccggcaagaacctctccgacccggaccgcttcaagttcgacggcacgggctactac
ctgaagtccacggacgagatgtacgccatcgactcctcggacgcctggcaggagggctgc
gccaacacccgcctggtcgccgagcagatcgacaccgccggcatgttcgaggccaggaac
ctcatgccgaagttcgacatccccgagggctacacggaggtcagctggttccgcgaggag
accatgcgcggcatgcagcgccgtttccccggcggcatcccggacgaccgtgtgaagcag
gtcgagtacgagatggacaccatcatctcgatggggttcccgggctacttcctcgtggtc
gccgacttcatcatgtgggccaagaagcagggcatcgcggtcggccccggccgaggctcc
gcggccggctcgatcgtcgcgtacgccctcggcatcaccgacctcgaccccatcccgcac
ggcctgatcttcgagcggttcctcaaccccgagcgcatctccatgcccgatgtcgacatc
gacttcgacgagcgccgacgcgtcgaggtcatcaggtatgtgaccgagaagtacggcgcc
gacaaggtcgccatgatcggcacgtacggcaagatcaaggccaagaacgccatcaaggac
tccgcgcgcgtgctgggctacccgtacgcgatgggcgaccgcctcaccaaggccatgccc
gccgacgtcctgggcaagggcatcgacctcaacggcatcaccgacccctcgcaccctcgt
tacagcgaggccggcgagatccggtcgatgtacgagaacgaaccggacgtgaagaaggtc
atcgacaccgccaagggcgtcgagggcctggtccggcagatgggtgtgcacgccgccggc
gtgatcatgtccagcgagaccatcaccgagcacgttcccgtgtgggtgaggcacaccgac
ggcgtgaccatcacacagtgggactacccgagctgtgagtcgctcggcctgctgaagatg
gacttcctcggcctgcgcaacctcacgatcatggacgacgccgtcaagatggtgaagtcc
aacaagggcatcgacatcgatctgctgagcctcccgctcgacgatccgaagaccttcgaa
ctgctccagcgcggcgacaccctgggcgtcttccagttcgacggcggccccatgcgctcg
ctgctgcgcctgatgaagcccgacaacttcgaagacatctccgccgtctccgcgctctac
cgtcccggcccgatgggcatggactcgcacaccaactacgccctccgcaagaacaagctc
caggagatcacgccgatccacaaggagctggaggagcccctcgaagaggtcctggcggtc
acctacggcctgatcgtctaccaggagcaggtgcagaaggccgcccagatcatcgccggg
tactcgctcggcgaggccgacatcctccgccgcgtgatgggcaagaagaagcccgaggaa
ctggcgaagaacttcaccatcttccagtccggcgcccagaagaacggctacagcgacgag
gccatccaggccctgtgggacgtgctggtccccttcgccggctacgccttcaacaaggcc
cactccgccgcgtacggcctggtgtcgtactggaccgcgtacctcaaggcgaactacccc
gccgagtacatggccggactgctcacctcggtcaaggacgacaaggacaagtccgcgatc
tatctgaacgagtgccggcgcatgggcatcaaggtgctcccgcccaacgtcaacgaatcg
gtgcacaacttcgccgcgcagggcgacgacgtgatcctcttcggcctggaggccgtgcgc
aacgtcggcacgaacgtggtcgagtcgatcatccgcagccgcaaggccaaggggaagtac
gcctccttcccggactacctcgacaaggtcgaggcggtcgcctgcaacaagcggaccacg
gaatccctgatcaaggccggcgcgttcgacacgatggggcacacccgcaagggcctcacc
gcgcagtacgagccgatgatcgacaacgtggtcgcggtcaagcgcaaggaggccgagggc
cagttcgacctcttcggcggaatgggcgaggaggagaccagcgagcccggcttcggcctc
gacgtcaccttctccgaggacgagtgggagaagacgtatctgctcgcccaggagcgggag
atgctcggtctgtacgtctccgaccacccgctcttcggcctggagcatgtgctgtccgac
aaggccgacgcgggcatcgcccagctcaccggaggtgagcacgcggacggcgcggtcgtc
accatcggcggcatcatctccggcctccagcgcaagatgaccaagcagggcaacgcctgg
gccatcgccaccgtcgaggacctggccggttcgatcgagtgcatgttcttcccggcgacc
taccagctcgtgtcgacccaactcgtcgaggacgcggtcgtgttcgtcaagggccgcctc
gacaagcgcgaggacgtgccgcgcctggtcgcgatggaactccaggtcccggatttgtcg
aacgcgggcacgaacgcaccggtgatcctcacgatcccggcgacccgggtcaccccgccc
atggtcaaccgcctcggtgagatcctcagccaccacaagggcgacagcgaggtccgcatc
aggctccagggcccgaccaagacgaccgtactgcgcctcgaccggcaccgggtgaagccg
gacccggcgctcttcggcgacctgaaggtcctgctcggcccgtcctgcctggcaggctga
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