Streptomyces graminofaciens: SGFS_087850
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Entry
SGFS_087850 CDS
T09325
Name
(GenBank) Pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sgrf
Streptomyces graminofaciens
Pathway
sgrf00040
Pentose and glucuronate interconversions
sgrf01100
Metabolic pathways
sgrf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
SGFS_087850
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SGFS_087850
Enzymes [BR:
sgrf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
SGFS_087850
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
BBC37491
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Position
9763227..9764534
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AA seq
435 aa
AA seq
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MRPRIWHAHVMTSVVGCTALVLGVTGTGVASAAPRDLGREILTTGDGWGSEGAGTTGGSA
ADASHVYTVTTWAQFKAALRDGGDAPKIIKVKGMIDAVSQGCEAFVAGGYDLQQYLKDYD
PAVWGNDKVASGPQEDARVASAANQDSEIKAAVPSNTTIVGVGKNSGILGGSLQIKGVSN
VILRNLTIEAPLDCFPKWDPTDDNRTGNWNSEYDAVVVYGTDHVWIDHNTLTDGRYPDSE
RPVYFGKVFQQHDGLTDIVRGSNYVTVSWNRFQNHDKNMLIGNGDGLATTDADKLKVTMH
HNRFDGILQRSPRVRFGQVDVYNNHYVVTEEQKDDYYIFGVGIRSQLHASDNAISLPSGA
SVGKALKKWNESPLTAQNNYVNGKLTDLIAVHNAEVPGEILQSGAGWTPTLRKKVDSPRA
VPGIVGAHAGAGKVC
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccccgtatctggcatgcccatgtcatgacttccgtcgtcggctgcaccgcgctc
gtgctcggcgtcaccgggaccggcgtcgcgtccgccgccccgcgtgatctcggtcgggaa
attctcaccaccggtgacgggtggggctcggagggcgccggtaccaccggtggctcggcc
gccgacgcctcgcacgtgtacaccgtcaccacctgggcccagttcaaggccgcgctcagg
gacggcggagacgcgccgaagatcatcaaggtcaagggcatgatcgacgccgtctcccag
ggctgcgaggccttcgtcgccgggggatacgacctccagcagtacctcaaggactacgac
ccggccgtctggggcaacgacaaggtcgccagcggcccgcaggaggacgcgcgggtcgcg
tccgccgccaaccaggactcggagatcaaggccgccgtccccagcaacaccaccatcgtc
ggcgtcggcaagaactccggcatcctcggcggcagcctccagatcaagggcgtctcgaac
gtcatcctgcgcaacctcaccatcgaggcccccctcgactgcttccccaagtgggacccg
accgacgacaacaggaccggcaactggaactccgagtacgacgccgtggtcgtctacggc
accgatcacgtgtggatcgaccacaacacgctcaccgacgggcgctaccccgacagcgag
cggccggtctacttcggcaaggtcttccagcagcacgacgggctcacggacatcgtgcgg
ggctccaactacgtgaccgtgtcctggaaccgcttccagaaccacgacaagaacatgctg
atcggcaacggcgacggcctcgccaccaccgacgcggacaagctcaaggtcaccatgcac
cacaaccgcttcgacgggatcctgcagcgttccccgcgggtgcggttcggacaggtcgac
gtctacaacaaccactacgtggtgaccgaggaacagaaggacgactactacatcttcggt
gtcggcatccgctcgcagctccacgccagtgacaacgcgatctcgctgccgtccggcgcg
agcgtgggcaaggcgctgaagaagtggaacgagtccccgctcaccgcccagaacaactac
gtcaacggcaagctgaccgacctgatcgccgtccacaacgccgaggtccccggcgagatc
ctgcagtccggtgccgggtggacgccgaccctgcgcaagaaggtcgactcgccgcgtgcc
gtgccgggcatcgtcggcgcccacgcgggtgccggaaaggtctgctga
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