Solicola gregarius: L0C25_00250
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Entry
L0C25_00250 CDS
T09807
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sgrg
Solicola gregarius
Pathway
sgrg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sgrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L0C25_00250 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgrg03400
]
L0C25_00250 (ligD)
Enzymes [BR:
sgrg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L0C25_00250 (ligD)
DNA repair and recombination proteins [BR:
sgrg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L0C25_00250 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UYM05554
UniProt:
A0AA46TIL8
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All DBs
Position
54149..55030
Genome browser
AA seq
293 aa
AA seq
DB search
MPSGSNHLELDGKQVRLSNLDKVLYPDDGTTKFDVIQHYLTVADVILPQLAGRPATRKRW
PDGVESKPFFEKNLPRGTPDWVRRVEIASPGSSKDRTHVTYPVIENRAGLAWVANLAALE
LHTPQWSVGPRDGIHDADRLVIDLDPGAPAGLPECVEVARLIRERLGDDDLDAIPVTSGS
KGMQLYAPLPTSRPPMELREYAYELATSLESDHPELVVSNMKKAQRGGKILLDWSQNNPA
KTTITPYSLRGRQRAWVATPRSWDELDDPESLRQVHHTEIPDRLETYGDLMTT
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcggtagcaaccacctcgagctggacggcaagcaggtccggctcagcaacctc
gacaaggtgctgtatcccgacgacggcaccacgaagttcgacgtgatccagcactacctc
accgtcgccgacgtgatcctgccgcagctggcgggccgcccggcgacccgcaagcgttgg
ccggacggcgtggagagcaagccgttcttcgagaagaacctcccgcgcggcacccccgat
tgggtacgccgggtcgagatcgcgtcaccgggcagcagcaaggaccgtacgcacgtcacg
tacccggtcatcgagaaccgcgccggcctcgcgtgggtggcgaacctcgcggcgctcgag
ctgcacaccccgcaatggtcggtcgggccgcgcgacggcatccacgacgcggaccggctg
gtgatcgacctcgacccgggcgcgccggcgggtctgccggagtgcgttgaggtggcgcga
ctgatccgcgagcggctcggcgacgacgatctcgacgcgataccggtgacgagcggcagc
aagggcatgcagctgtacgctccgctcccgacgtcgcggccgccgatggagctgcgggag
tacgcgtacgagctcgcgacgtcgctggagagcgaccaccccgagctggtcgtctccaac
atgaagaaggcgcagcgcggcggcaagatcctgctcgactggagtcagaacaaccccgcg
aagaccaccatcacgccgtactcgctgcgcggccggcagcgggcctgggtggcgaccccg
cgatcgtgggacgagctcgacgaccccgagtcgctgcgccaggtgcaccacaccgagatc
cccgatcgcctcgagacgtacggcgacctgatgaccacctag
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