Solicola gregarius: L0C25_03255
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Entry
L0C25_03255 CDS
T09807
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sgrg
Solicola gregarius
Pathway
sgrg03420
Nucleotide excision repair
sgrg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L0C25_03255
03430 Mismatch repair
L0C25_03255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgrg03400
]
L0C25_03255
Enzymes [BR:
sgrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L0C25_03255
DNA repair and recombination proteins [BR:
sgrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L0C25_03255
MMR (mismatch excision repair)
Other MMR factors
L0C25_03255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UYM06104
UniProt:
A0AA46YLY9
LinkDB
All DBs
Position
complement(646225..649566)
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AA seq
1113 aa
AA seq
DB search
MSGKERARDERLDARDQGAMSGKERARDERLDARDQGAMSGEERATPGRVILRDEAHLSD
VLGIPFSDQQLAAVTAPLDRPAAIIAGAGSGKTAVMAARVVWLVGRGIVEPGDVLGLTFT
NKAAAELAVRIRAALGLLADDAGIRGFLDELGEPTVSTYHAYAGALLSEHGLRMGFEPDL
RIASDASRFQRAAQALQSHRGAIANLTTHLPTTVNDLIHLDGQLNDHLVPIESLLSSDAG
FARELDVENASRKRPLKAITRARDTTDKRAELAAVIAEYREVKSRDAVMDFSDQMARGAI
LATESPEVSRDQRSRFAVVLLDEYQDTSVAQRMMLQGLFSGATPQAGRGHPVTAVGDPCQ
AIYGWRGASADNLVGFLDHFPAEDGERGSVLNLTVNRRCSTTVLDVANSLAAPLYAETDT
VRPLEPRDDAPEGGIVAACLDTVVDEIDWVVRQVQAAKERDAPRWSDIAILVRTREEIGA
LTVALQSAEIPVEVVGMDGLLEQPEVADVLAVLDVVDSQTANASLLRLLTGARWRIGPRD
LALLGTRARQLVAGAPPVGDDDLQTALDRATEGVDPADVLSLADALDDPGDLAYSPEARE
RFADISRLLRQLRAHAAEPLVDVVRRTITALDLDIELAVQPGARGQQSRDNIAMLIEAIA
DFAGNEPSASLTGALAYLRAEAEYNGGLDVAAPSDSDSVKLLTAHKAKGLEWHTVLVPFL
SDKVFPQGKSRDAWPFTARELPAELRGDAASQPVVEEWSTKGVDEYNRQRREQALVEERR
LGYVAFTRAKHSLVVSGHWWGRTQLEPRGPSAYLEHVRTWLKSRGAEPARWAPDPRVGEE
EVRNPLIAARSSIAWPAAMPADVVQRRRQVADDVREAMRTPQLPIPVESADPDARRQLAD
LRALDADIDVLLEEARLRRRDVIEVPLPSSLSVTAAQRLTDDPEGLARDLARPMPRKPSA
AARFGTRFHAWVESRLGQQALLDPMDLPGRADAEIDDAEELVELIEQFDDGPYATRVPYA
VEAPFSLRIGAQLLRGRIDAVYRDGDRYEVVDWKTSRAATADPLQVELYRVAWAEMHGVP
ETDVSATFYYVRLGKVVTLEEPRGRVELERLFG
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcaaggagagagcgagggacgagcggctcgacgcgcgcgaccagggggcaatg
agcggcaaggagagagcgagggacgagcggctcgacgcgcgcgaccagggggcaatgagc
ggcgaggagagagcgacaccggggcgcgtgatcctgcgcgatgaagcccacttgagtgac
gtcctgggcattccgttcagcgaccagcagctcgcggcggtcacggcgccgctcgaccgg
ccggccgcgatcatcgccggtgccggctcgggcaagaccgccgtcatggctgcgcgggtg
gtgtggctggtcggccgcggcatcgtcgagccgggcgacgtgctgggcctgacgttcacc
aacaaggccgccgccgagctcgccgtacgcatccgcgccgcgctcggcctgcttgccgac
gatgccggcatccggggcttcctcgacgagctgggcgagccgaccgtctcgacgtaccac
gcgtacgccggtgcgttgctcagcgagcatggtctgcggatggggttcgaacccgacctg
cgcatcgcctccgacgcttcgcgtttccagcgtgccgcgcaggcgctgcagtcgcaccgt
ggcgcgatcgcgaacctcacgacgcatctgccgacgacggtcaacgacctcatccacctc
gacgggcagctcaacgaccacctcgtgccgatcgagtccttgctctcgtcggatgcgggg
ttcgctcgagagctcgacgtcgagaacgcgtcgcgtaagcgtccgctcaaggcgatcacg
cgggcgagggacacgaccgacaagcgtgccgagctggcggctgtgatcgccgagtaccgc
gaggtcaagtcacgggatgcggtgatggacttctccgaccagatggcgcggggcgcgatc
ctcgcgaccgagtcgccggaggtgtcgcgcgaccagcggagccggttcgccgtcgtactc
ctcgacgagtaccaagacacctctgtcgcgcagcggatgatgctgcaggggctgttctcg
ggcgcaacaccgcaagcggggcgcggccacccggtgaccgccgtcggtgacccgtgccaa
gccatctacggatggcggggtgcgtcggccgacaacctggtggggttcctcgaccatttc
cccgctgaagacggtgagcgcgggtcggtcctcaacctcaccgtcaaccgccgctgcagc
acgacggtcctcgacgttgcgaactcgctggccgcgccgctgtacgccgagaccgatacg
gtccggccgctcgagccgcgcgacgacgcacccgagggcggcatcgtcgccgcctgcctc
gacaccgtcgtcgacgagatcgactgggtcgtacgccaggtgcaggccgccaaggagcgg
gatgcgccgcgctggtccgatatcgcgatcctggtgcgcacgcgcgaggagatcggcgcg
ctcaccgtcgcacttcagtcggccgagatcccggtcgaggtcgtcggcatggatggcctg
ctcgagcagccggaggtcgccgacgtactcgcggtcctcgacgtcgtcgactcgcagacc
gcgaacgcctcgctgctgcgactgctcacgggggcgcgttggcgcatcggcccgcgcgac
ctcgcactgctcggcacccgggcgcgtcagctggtcgcgggggcgcctccggtcggcgac
gacgacctgcagacggcgctcgaccgagccaccgaaggcgtcgaccccgccgacgtgttg
tcgctcgccgacgccctcgacgatccgggcgacctggcgtactcgccggaggcgcgcgag
cgcttcgccgacatctcacgtctgcttcgacagcttcgtgcgcacgccgccgagccgctc
gtcgacgtggtccgccggacgatcaccgcgctcgacctcgacatcgagctcgcggtgcag
ccgggtgcgcgtggccagcagagccgcgacaacatcgccatgctgatcgaggcgatcgcc
gacttcgccggcaacgagccgagcgcgtcgctgaccggcgcgctcgcgtacctgcgtgcg
gaggccgagtacaacggcgggctcgatgtcgccgcgcccagcgacagcgactcggtcaag
ctgctcaccgcacacaaggccaaggggctcgagtggcacaccgtcctggtgccgttcctg
agcgacaaggtgttcccgcagggcaagtcgcgtgacgcatggccgttcacggcgcgggag
ctgcccgccgagctgcgcggagacgccgcgagccagccggtcgtcgaggagtggtccacg
aagggcgtcgacgagtacaaccggcagcgacgcgagcaggcgctcgtcgaggagcgtcgc
ctcgggtacgtcgcgttcacccgtgccaagcactcgttggtggtcagcggccactggtgg
gggcgtacccagctcgagccacgcgggccgtcggcgtacctcgagcacgtacgcacgtgg
ctgaagtcgcgtggcgctgagcccgcccggtgggcgcccgacccgcgcgtcggcgaggag
gaggtccgcaacccgctgatcgccgctaggtcgtcgatcgcgtggccggccgcgatgccg
gccgatgtcgtgcagcgccgacgccaggtggccgacgacgtacgcgaagcgatgcgtacg
ccgcagctgcccatcccggtggagtcggcggaccccgacgcccggcgccagcttgcagac
ctgcgggcgctcgacgccgacatcgacgtgttgctcgaggaagcgcgactgcggcgacgg
gacgtcatcgaggtgccgctgccgagcagcctgtcggtgaccgccgcgcaacgcctcacc
gacgacccggagggcctggcgcgtgacctcgcccggccgatgccgcgcaagccgtcggca
gccgcccggttcggcaccaggttccatgcctgggtcgagtcacggctcggtcagcaggcg
ctgctcgacccgatggacctacctggccgggccgacgccgagatcgacgacgccgaggag
ctcgtcgagctgatcgaacagttcgacgacggcccgtacgcgactcgagtgccgtacgcc
gtcgaagccccgttctcgctgcggatcggcgcacagctgctgcgtggccgcatcgacgcc
gtgtaccgcgacggcgaccgttacgaggtcgtcgactggaagacgagccgggccgccacc
gccgacccgctgcaggtcgagctgtaccgcgtcgcgtgggccgagatgcacggcgttccc
gagaccgacgtctcggcgacgttctactacgtacgcctcggcaaggtcgtcaccctcgag
gagccgcgtggccgtgtcgagctggagcggctgttcgggtga
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