Solicola gregarius: L0C25_07370
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Entry
L0C25_07370 CDS
T09807
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sgrg
Solicola gregarius
Pathway
sgrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0C25_07370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgrg03019
]
L0C25_07370
03009 Ribosome biogenesis [BR:
sgrg03009
]
L0C25_07370
Enzymes [BR:
sgrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L0C25_07370
Messenger RNA biogenesis [BR:
sgrg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L0C25_07370
Ribosome biogenesis [BR:
sgrg03009
]
Prokaryotic type
rRNA helicases
L0C25_07370
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UYM06886
UniProt:
A0AA46TKB6
LinkDB
All DBs
Position
complement(1470884..1472638)
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AA seq
584 aa
AA seq
DB search
MSDSESPASFAELGIAPPVLASLADVGYEAPSPIQAATIPPLMAGRDVVGLAQTGTGKTA
AFALPILSRIDVGRRRPQALVLAPTRELALQVAEAFGRYAAHLDGVHVVPVYGGTGYGPQ
LGALKRGAQVVVGTPGRVIDHLKKGTLDISELDYLVLDEADEMLAMGFQEDVERILADTP
EYKQVALFSATMPAAIRRMSGRYLHDPEEIRVEARTVTAENTTQRYAIVDHRQKLEALTR
VLEVESFDGMIVFVRTKQATEDLAERLRARGFSAAAINGDLVQAQRERTIGQLRSGALDI
LVATDVAARGLDVERISHVVNYDIPSDTESYVHRIGRTGRAGRAGQAILFVTPRERRLLR
AIEKATRQPVEEMTLPSVEDVNSTRVSRFLDSITEALGASDLTYFRDLVERYEQEHDVPA
ADVAAALAVIAQGDRSFLLQPEPPLKRRPRDEGHRPARVAGRRRANGRAMATYRIRVGKR
HKVSPGAIVGAIANEGGLERRDFGKIEIRVDHSLVELPADLDSSTVQSLTRTRISGQLIG
LERERAGGGSRGGGRPTNARTGGAPRGAGKKRAPDGTKLRHKGR
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattccgaatctcccgcttccttcgccgagctcgggatcgcgccgcccgtacta
gcctccctcgccgacgtcggctacgaagcgccgtcgccgatccaggccgccacgatcccg
ccgctgatggccgggcgtgacgtggtcggtctcgcgcagaccggcaccggcaagaccgcg
gccttcgcgctgccgatcctgtcgcgcatcgacgtcggccgccgtcgaccgcaggccctg
gtgctggcgccgacccgcgagctcgccctgcaggtcgcggaggcgttcggccggtacgcc
gcgcatctcgacggagtgcacgtcgtacccgtgtacggcggcacgggctacggcccgcag
ctcggtgccctcaaacggggcgcccaggtggtcgtcggtacgccgggccgcgtgatcgac
catctgaagaagggcaccctcgacatctccgagctcgactacctcgtgctcgacgaggcc
gacgagatgctcgcgatgggcttccaggaggacgtcgaacgcatcctcgccgacacaccc
gagtacaagcaggtcgcactgttctcggcgaccatgcccgccgcgatccgccgaatgtcg
gggcgctacctgcacgaccccgaggagatccgggtcgaggcgcgtaccgtcacggccgag
aacaccacccagcgttacgcgatcgtcgaccatcggcagaagctcgaggcgttgacgcgg
gtgctcgaggtcgagtcgttcgacggcatgatcgtgttcgtacgcacgaagcaggcgacg
gaggatctcgcagaacgcttacgtgcaaggggattctctgcggcggcgatcaacggtgac
ctcgtgcaggcgcagcgcgagcggacgatcggccagctcaggtcgggcgcgctcgacatc
ctggtcgcgaccgacgtcgctgctcgcggcctcgacgtcgagcggatcagccatgtcgtc
aactacgacatcccgtccgacaccgagtcgtacgtgcaccgcatcggacgcacgggtcga
gcgggccgtgcagggcaggcgatcctgttcgtcacaccccgagagcgccgactgctgcgc
gcgatcgagaaggcgacccgccagcccgtcgaggagatgaccctgccgtcggtggaggac
gtcaactcgacacgggtcagccggttcctcgactcgatcaccgaggcgctcggcgcgagc
gacctcacgtatttccgcgacctggtcgagcggtacgaacaggagcacgacgtgcccgcg
gccgacgtggccgccgcgctcgcggtcatcgcacagggcgaccgctcgttcctgcttcag
cccgagccgccgctcaagcggcggccgcgcgacgaggggcaccggcccgcgcgggtcgcc
ggtcgtcgacgggccaacgggcgcgcgatggcgacgtaccgcatccgggtggggaagcga
cacaaggtcagcccgggagcgatcgtcggcgcgatcgcgaacgagggcgggctcgagcgc
cgcgacttcggcaagatcgagattcgggtcgaccacagcctcgtcgagcttccggcggac
ctggattcgtctaccgtgcagtcgctgactcgtacgcggatctccgggcagctgatcgga
ctcgaacgcgagcgcgccggcggcggatcgcgtggtggcggccggcccaccaatgcgcgg
accggcggtgcccctcgcggggcgggcaagaagcgcgcaccggacgggacgaagctccga
cacaagggccgttga
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