Solicola gregarius: L0C25_14415
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Entry
L0C25_14415 CDS
T09807
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sgrg
Solicola gregarius
Pathway
sgrg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sgrg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L0C25_14415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgrg03021
]
L0C25_14415
03400 DNA repair and recombination proteins [BR:
sgrg03400
]
L0C25_14415
Enzymes [BR:
sgrg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L0C25_14415
Transcription machinery [BR:
sgrg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L0C25_14415
DNA repair and recombination proteins [BR:
sgrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L0C25_14415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UYM03733
UniProt:
A0AA46YK85
LinkDB
All DBs
Position
2943211..2947038
Genome browser
AA seq
1275 aa
AA seq
DB search
MQDVNFFDQLQIGLATAEDIRTWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITQVDEDARHRDLSSLEAKIDVERKGMESKRDNDIEQRMAKLEED
LAALEAEGAKADQRRKVKDAAEREAKQIRDRAQREIDRLDEVWDRFKNLKVQDLEGDEIL
YREMTYRFGKYFEGYMGAAAIQKRLETFDLNAEADSLRETINTGKGQRKTRALKRLKVVS
AFLANNNDPKGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMAIELFKPFVMKRLVDLNHAQNIKSAKRMVERGV
RAEVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCSAFNADFDGD
QMAVHLPLSAEAQAEARILMLSTNNILKPADGRPVTMPTQDMIIGIFFLTFAREDQPGEG
RAFGSIAEAIMAFDHKEISLQSPIKLRFRDGETRETTLGRALFNEALPEDYPYVDYEVGK
KQLGVIVNDLAERYSKVDVANALDNLKDTGFHWATRSGVTISIEDVVTPPRKQEILATYE
DQAVKVQKQFGRGLITDDERRQELIEIWTQATNEVAAEMEGTFDKENPIYMMVHSGARGN
MMQVRQIAAMRGLVANPKGEIIPRPIKANFREGLSVVEYFIATHGARKGLADTALRTADS
GYLTRRLVDVSQDVIIREDDCGTERGLPKVIGQRLDDGRVIATENVETSVYSRTAATDIA
HSETGEVLVKAGGDIGDVQIAELVDAGVDQIKVRSVLTCEARTGTCAKCYGRSLATGKLV
DLGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGDDITHGLPRVVELFEARQPKGRAPITE
SAGRIEIDETDKGRKILVTPDDGTDVQEYPVTKRARLLVGDGDHVEVGQQLTHGTPDPQE
VLRILGVRKAQEHLVDEVQEVYRSQGVSIHDKHIEIIVRQMLRRVTVIEQGDTNLLPGDL
HDRVRFEEENRRVVSESGSPASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAIHG
KSDSLRGLKENVIIGKLIPAGTGLERYRNIRVEPTEEARAAAYSVSGYESYDYDFGQSTG
QSVALDDFDFGSYQN
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggacgtgaacttcttcgaccaactgcagatcggccttgcgactgcagaggacatt
cgtacctggtcccacggcgaggtgaagaagccggagaccatcaactaccgcacgctcaag
cccgagcgcgacggcctcttctgcgagaagatcttcggcccgacccgcgactgggagtgc
tactgcggtaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgtggcgtc
gaggtcacccgctcgaaggtacgccgcgagcggatgggccacatcgagctcgccgcgccc
gtgacccacatctggtacttcaagggtgtgccgtcgcggctcggctacctgctcgatctc
gctccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcacccaggtcgac
gaggacgcgcgccaccgcgacctgtcctcgctcgaggccaagatcgacgtcgagcgcaag
ggcatggagtccaagcgcgacaacgacatcgagcagcggatggccaagctcgaggaagac
ctcgccgccctcgaggccgagggtgccaaggccgaccagcgtcgcaaggtcaaggacgcc
gccgagcgcgaggccaagcagatccgcgaccgcgcgcagcgcgagatcgaccgtctcgac
gaggtctgggatcgcttcaagaacctcaaggtccaagacctcgagggcgacgagatcctc
taccgcgagatgacgtaccggttcggcaagtacttcgagggctacatgggcgccgcggcg
atccagaagcgtctcgagacgttcgacctgaacgccgaggccgactcgctgcgcgagacg
atcaacaccggcaagggccagcgcaagacccgcgccctgaagcggctcaaggtcgtctcg
gcgttcctcgccaacaacaacgaccccaagggcatggtgctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccggttcgcgacgtccgacctg
aacgacctgtaccgccgggtcatcaaccgcaacaaccggttgaagcggctgctcgacctc
ggcgcacccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgactcg
ctgttcgacaacggccgccgcggtcgccccgtcaccgggccgggcaaccgtccgctgaag
tcgatctccgacatgctcaagggcaagcagggtcgcttccggcagaacctcctcggtaag
cgcgtcgactactccggccgctcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgatcgagctgttcaagccgttcgtgatgaagcgcctc
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgcggcgta
cgcgccgaggtctgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaac
cgcgcaccgacgctgcaccggctcggcatccaggcgttcgagccgcagctgatcgagggc
aaggccatccagatccacccgctcgtctgctcggcgttcaacgccgacttcgacggcgac
cagatggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatg
ctgtcgaccaacaacatcctgaagccggccgacggtcgcccggtgacgatgccgacgcag
gacatgatcatcggcatcttcttcctcacgttcgcgcgtgaggaccagccgggtgagggc
cgcgcattcggctcgatcgccgaggcgatcatggcgttcgaccacaaggagatcagcctc
cagtcgccgatcaagctccgcttccgcgacggcgagacgcgcgagacgaccctcggccgg
gcgctgttcaacgaggcgctgccggaggactacccgtacgtcgactacgaggtcggcaag
aagcagctcggcgtgatcgtcaacgacctcgcggagcggtactccaaggtcgacgtcgcg
aacgcgctcgacaacctcaaggacaccgggttccactgggccacccgctccggtgtgacc
atctccatcgaggacgtcgtcacgccgccgcgcaagcaggagatcctcgcgacgtacgag
gaccaggccgtgaaggtgcagaagcagttcggccgcggcctgatcaccgatgacgagcgc
cgccaggagctcatcgagatctggacgcaggcgaccaacgaggtcgccgccgagatggag
ggcaccttcgacaaggagaaccccatctacatgatggtgcactccggagcccgcggaaac
atgatgcaggtacgccagatcgccgccatgcgtggactcgtcgccaacccgaagggcgag
atcatcccgcggccgatcaaggcgaacttccgcgagggcctgtcggtcgtcgagtacttc
atcgcgacccacggcgcccgcaagggtctcgcggacaccgcgctgcgtaccgccgactcg
ggctacctgacccgtcgactcgtcgacgtcagccaggacgtcatcatccgcgaggacgac
tgcggtaccgagcggggcctgccgaaggtcatcggtcagcgcctcgacgacggccgcgtc
atcgcgaccgagaacgtcgagacgtcggtgtactcgcgtaccgccgcgaccgacatcgcc
cactccgagaccggcgaggtgctggtcaaggccggtggcgacatcggtgacgtgcagatc
gccgagctggtcgacgccggtgtggatcagatcaaggtccgctccgtgctgacctgcgag
gcacgtaccggaacgtgtgccaagtgctacggccgctcgctggcgaccggcaagctcgtc
gacctcggtgaggccgtcggcatcgtcgccgcccagtcgatcggcgagccgggtacgcag
ttgaccatgcgtaccttccacaccggcggcgtcgccggtgacgacatcacgcacggtctg
ccgcgcgtcgtcgagctgttcgaggcccgccagcccaagggccgcgcgccgatcaccgag
tcggccgggcggatcgagatcgacgagaccgacaagggtcgcaagatcctggtcacgccc
gacgacggcacggatgtccaggagtacccggtcaccaagcgtgcccggctcctggtcggc
gacggcgaccatgtcgaggtgggccagcagctcacgcacggtacgcccgacccgcaggag
gttctgcggatcctcggcgtacgcaaggcgcaggagcacctcgtggacgaggtccaggag
gtctaccgcagccagggcgtgtcgatccacgacaagcacatcgagatcatcgtccggcag
atgctgcgccgggtcacggtcatcgagcagggcgacacgaacctgctgcccggggacctg
cacgaccgggtgcgcttcgaggaggagaaccgtcgggtcgtatccgagagcggttcgccc
gcgtcgggccgtccggtgctgatgggcatcacgaaggcgtcgctcgcgaccgactcgtgg
ctgtccgcggcgtcgttccaggagacgactcgggtgctcaccgatgcggcgatccacggc
aagtccgactcgctgcgcggtctgaaggagaacgtcatcatcggcaagctgatcccggcg
ggcaccggcctcgagcggtaccgcaacatccgggtcgagccgaccgaggaggcgcgcgcc
gcggcgtactccgtcagcggttacgagtcgtacgactacgacttcggtcagagcaccggg
cagtccgtcgctctggacgacttcgacttcggttcgtaccagaactga
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integrated database retrieval system
