Solicola gregarius: L0C25_17510
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Entry
L0C25_17510 CDS
T09807
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sgrg
Solicola gregarius
Pathway
sgrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0C25_17510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgrg03019
]
L0C25_17510
03009 Ribosome biogenesis [BR:
sgrg03009
]
L0C25_17510
Enzymes [BR:
sgrg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L0C25_17510
Messenger RNA biogenesis [BR:
sgrg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L0C25_17510
Ribosome biogenesis [BR:
sgrg03009
]
Prokaryotic type
rRNA processing factors
L0C25_17510
BRITE hierarchy
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UYM04320
UniProt:
A0AA46YJ98
LinkDB
All DBs
Position
3569828..3572548
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AA seq
906 aa
AA seq
DB search
MLDEDSGSAASTGTTTSGTAEAPKRRRAVSRPAGPPAATTFSAAEPPAEPKRTTKKKSTK
KATPTAEADGGADESNAASVKPVDAPEADATVGDAADDTAKKATAKKATSRKRQSKKPAD
DADDSDMSVGATEVSRATTASPFAAPLFQAPDPVRARSKPAPEPTEEPAAASDHADDDSD
DGSDDSGGTRRRRRRGGRRRRRSDDEAPEAGDQDDDSSKAKSSGEQTKKTDDSDDSDHGG
SSDDKSDDGSSRRRRRRRRRGEEPAAATDDPANTVTKVRERRSAEDEITSVSGSTRLEAK
KQRRREGREAGRRRAPIVTEAEFLARRESVKREMVIRQRPDLSQIAVLEDDVLVEHYVAA
ASQSSMIGNVYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWKALGNGKPRKIEEVLK
SGQTVLVQVTKDPIGHKGARLTSQVSLAGRFLVYVPGGQTNGISRKLPDTERNRLKGLLK
EILPEEAGVIIRTAAEGATEEQLQRDVSALTARWDDIEQKAEKQNGPQLLYGEPDLMIKV
VRDLFNEDFAKLTVEGDEAWDMVNGYVQHVAPDLSDRLEHWTSGDKDSFESYRIDEQISK
AVDRKVWLPSGGSLIIDRTEAMTVIDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRL
RDIGGIIVIDFIDMVLENNRDLVLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRIGTGL
VEAFSETCEHCNGRGLIIHNEPVEPRKRSDDSPRGRRRGKGRGGEKSDGEKSDGEKSGGD
KSGGEKSGGEKSGGEKSGGDNADRRGNDERKPASKTGKGGNDKPKAESTSGEQPKGGDEP
KAGEQPTSGADKPKSGGRRSRSRKGSSNGESKSEETPTSGDVSTSGDATPTGDSVAAGVA
EAPTAH
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacgaagacagcggctcggccgcatccaccggcaccaccacatcgggaacggcc
gaggccccgaagcgccgacgcgccgtatcccggccagcgggaccgccggccgcgacgacg
ttctctgccgctgaacccccggcggagccgaagcggacgacgaagaagaagtcgacgaag
aaggcgacgcccacggccgaggccgatggtggcgcggacgagtcgaacgccgcttccgtc
aagcccgtcgatgcccctgaggccgacgccacggttggcgacgcggccgacgacaccgcg
aagaaggcgacggcgaagaaggcgacctcgcgcaagaggcagtcgaagaagccggccgac
gacgcagacgactcggacatgtcggtcggcgccaccgaggtatctcgagcgaccaccgcc
tcaccgttcgccgctccgctgttccaggcgcccgaccccgtgcgcgcgaggtcgaagccc
gcgcccgagcccaccgaggaacccgcggccgcatccgaccacgcagacgacgactccgat
gacggatccgacgactccgggggtacgcgccgtcgccgtcgccgcggaggtcgtcgccgg
cgccgaagcgacgacgaggcgcccgaggccggcgaccaggacgacgactcgtcgaaggcg
aagtcgtccggcgagcaaaccaagaagaccgacgactccgacgactccgaccacggtggc
tcgtccgacgacaagtccgatgatggttcgagccgtcgtcgacgccgtcggcgccggcgc
ggtgaagagccggcggccgccaccgacgaccccgcgaacaccgtcacgaaggtacgcgag
cggcgtagcgccgaggacgagatcaccagcgtctcgggctcgacccggctcgaggccaag
aagcagcggcgtcgcgagggtcgcgaggccggtcgacgccgtgcaccgatcgtgaccgag
gccgagttcctcgcccggcgtgagtcggtcaagcgcgagatggtgatccggcagcgcccc
gacctctcgcagatcgcggtgctcgaggacgacgttctcgtggagcactacgtcgccgcg
gcgtcccagtcgtcgatgatcggcaacgtctacctcggccgggtgcagaacgtcctgccg
agcatggaagccgcgttcatcgacatcggcaagggccgcaacggcgtgttgtacgcgggc
gaggtcgactggaaggcgctcggcaacggcaagccgcgcaagatcgaggaggtcctcaag
tccggccagaccgttctggtccaggtcaccaaggacccgatcggtcacaagggcgctagg
ttgaccagccaggtcagcctggccggacgcttcctggtgtacgtacccggcggacagacg
aacggcatctcccgcaagctgcccgacaccgagcgcaaccgcttgaagggtctgctcaag
gagatccttcccgaggaggccggcgtcatcatccgcacggccgccgagggcgcgaccgag
gagcagctccagcgtgacgtatcggcattgacggcgcggtgggacgacatcgagcagaag
gccgagaagcagaacggcccgcaactgctgtacggcgagccggatctgatgatcaaggtc
gttcgcgacctgttcaacgaggatttcgcgaagctgaccgtcgagggcgacgaggcctgg
gacatggtcaacgggtacgtgcagcacgtcgcgcccgatctgtccgaccggctcgagcac
tggacctcaggcgacaaggattccttcgagtcgtaccgcatcgacgagcagatctcgaag
gcggtcgatcgcaaggtgtggctgccgtccggtggatcgctgatcatcgaccgcaccgag
gcgatgaccgtcatcgacgtcaacaccggcaagttcaccggctccggcggcaacctcgag
gagacggtgaccaagaacaacctcgaggcggccgaggagatcgtgcggcagctgcggctg
cgcgatatcggcggcatcatcgtgatcgacttcatcgacatggtgctcgagaacaaccgg
gatcttgtgttgcgccgcctcgtcgagtgcctcggccgcgaccgtacgcgccaccaggtg
gcggaggtgacctcgctcggactcgtgcagatgacccgaaagcgcatcggcaccggcctg
gtagaggcattcagcgagacctgcgagcactgcaacggccgtggtctcatcatccacaat
gagcccgtcgagccgcgcaagcgttccgacgactccccgcggggtcgtcgtcggggtaag
gggcgcggcggcgagaagtctgacggcgagaagtctgacggcgagaagtccggcggcgac
aagtccggcggcgagaagtccggcggcgagaagtccggcggcgagaagtccggcggcgac
aacgccgacaggcgcggcaacgacgaacgcaagccggcatcgaagaccggtaagggtggc
aacgacaagcccaaggcggagtcgacgtccggcgaacagccgaagggcggcgacgagccg
aaggccggcgagcagccgaccagcggcgccgacaagccgaagtccggtggccgcaggtcg
cggtcgcgtaagggcagctcgaacggcgagtcgaagtccgaggagacgccaacctccggc
gatgtgtcgacatccggtgacgcgaccccgaccggtgattccgtcgccgccggtgtcgcc
gaggcaccgaccgcgcactga
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