Solicola gregarius: L0C25_18605
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Entry
L0C25_18605 CDS
T09807
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sgrg
Solicola gregarius
Pathway
sgrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L0C25_18605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgrg03019
]
L0C25_18605
Messenger RNA biogenesis [BR:
sgrg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L0C25_18605
BRITE hierarchy
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
eIF-1a
Motif
Other DBs
NCBI-ProteinID:
UYM04524
UniProt:
A0AA46TFS0
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All DBs
Position
3801114..3802805
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AA seq
563 aa
AA seq
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MSHTHPELGAPPALQPGALRVTPLGGLGEIGRNMTVFEYDGKLLVVDCGVLFPEDHQPGV
DLILPDFESIRDRLDDIVGIVLTHGHEDHIGGVPYLLRERGDIPVIGSKLTLALVDSKLR
EHRLKDIPHYVVAAGDIEGFAPFECEFVAVNHSIPDALAVAIRTPAGTVVHTGDFKMDQL
PLDGRITDLRAFARLGEAGVDLLLSDSTNSDVPGFTTTEREITPVLDRVFAASEQRIIVA
CFASHIHRVQQVLNAAVEHGRKVAYIGRSMVRNMAIARDLGYLQVPDGVLVDGRAIEDYR
PDELVLVSTGSQGEPMSALARIANRDHDKVRIEPGDTVVLASSMIPGNENAVYRVINGLT
RLGARVVHKGNALVHVSGHASAGELLYLYNIVRPDNVMPVHGETRHLHANAALAAATGVP
AERVLIGEDGMVVDLRDGVARIVGQVDCGYVYVDGSTVGDITDSELKDRRILGEEGFISV
IVVIDSTTGKIVSGPQIQARGFAEDDSVFNDIRPRLEEALELAVRDGVRDTYQLQQTIRR
TIGRWVSGAHRRRPMIVPIVIEA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacacccaccccgagctcggcgcaccgccggcgctccagcccggcgccttgcgc
gtcaccccgctcggcgggctcggcgagatcggtcgcaacatgaccgtgttcgagtacgac
ggcaagctgctcgtggtcgactgcggcgtgctgttccccgaggatcaccagccgggcgtc
gacctgatcctgccggacttcgagtcgatccgagaccggctcgacgacatcgtcggcatc
gtgttgacgcatggccacgaggatcacatcggcggcgttccgtacctcttgcgcgagcgc
ggcgacatcccggtcatcggctccaagctcacgttggcgctggtcgactccaagctgcgc
gagcaccggctcaaggacatcccgcactacgtcgtcgcggccggtgacatcgagggcttc
gctccgttcgagtgcgagttcgtcgccgtgaaccactccatcccggacgcattggcagtc
gcgatccgtacgcccgccggaaccgtcgtgcacacgggcgacttcaagatggaccagctg
ccgctcgacgggcgcatcaccgacctgcgcgcgttcgcccggctcggcgaggcgggcgtc
gacctgttgttgtccgactcgacgaactccgacgtgcccgggttcacgacgaccgagcgc
gagatcacgccggtcctcgaccgggtgttcgccgcgtcggagcagcggatcatcgtggcc
tgcttcgcctcgcacatccaccgcgtgcagcaggtgctgaacgccgccgtcgagcatggt
cggaaggtcgcttacatcggccgctcgatggtgcgcaacatggcgatcgcgcgcgatctg
gggtacctgcaggtgcccgacggtgtgctcgttgacggccgcgcgatcgaggactaccgt
cccgacgagctcgtcctggtctcgaccggctcgcagggcgagccgatgtcggcacttgcg
cggatcgccaaccgtgaccacgacaaggtccgcatcgagcccggcgacaccgtcgtgctc
gcgtcgtcgatgatccccggcaacgagaacgccgtgtatcgcgtcatcaacggactcacc
aggcttggcgcgcgggtcgtacacaagggcaacgccctggtgcacgtctcgggacacgcg
tcggcgggggagctcctctacctctacaacatcgtgcgaccggacaacgtgatgcccgtc
cacggtgagacgcggcacctgcacgcgaacgccgcgctcgcggccgccaccggggtgccg
gccgaacgggtgctcatcggcgaggacggcatggtggtcgaccttcgcgacggcgtcgcc
cggatcgtcggccaggtcgactgcggctacgtctacgtcgacggttcgacggtcggcgac
atcacggactccgagctgaaggaccgccggatcctcggcgaggagggcttcatctcggtc
atcgtcgtgatcgactcgacgaccggcaagatcgtcagtggtccgcagatccaggcccgc
gggttcgccgaggacgactccgtcttcaacgacatccggccacgcctggaggaggccctc
gagctcgccgtccgcgacggggtgcgcgatacgtaccagctgcagcagacgattcgccgc
acgatcggccgctgggtcagcggcgcgcatcggcgtcgcccgatgatcgtgcccatcgtg
atcgaggcctga
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