Serratia grimesii: SGBXF1_00171
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Entry
SGBXF1_00171 CDS
T09948
Name
(GenBank) Uncharacterised protein
KO
K03628
transcription termination factor Rho
Organism
sgri
Serratia grimesii
Pathway
sgri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGBXF1_00171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgri03021
]
SGBXF1_00171
03019 Messenger RNA biogenesis [BR:
sgri03019
]
SGBXF1_00171
Transcription machinery [BR:
sgri03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SGBXF1_00171
Messenger RNA biogenesis [BR:
sgri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SGBXF1_00171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
SMZ54595
LinkDB
All DBs
Position
1:197657..198916
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaaccttgcccgtatgcgcaagcaggacattatcttctctatccttaag
cagcatgcgaaaagtggagaagatatcttcggcgatggcgtgttggagatattgcaagat
ggatttggtttcctccgctctggagacagctcctaccttgcaggccccgacgacatctac
gtatcccctagccaaatccgccgtttcaacctccgtacaggtgacaccatttccggtaag
attcgtccgccaaaagaaggcgagcgctactttgccctgttgaaagttaacgaagttaac
tacgacaaaccggaaaacgcccgcagcaagatcctgttcgagaacttaaccccactgcat
gccaactcccgtctgcggatggagcgcggtaacggctcaaccgaagacttgactgcacgc
gtgctggatctggcttcaccgattggtcgtggtcagcgtggtctgattgttgctccgccg
aaagccggtaaaaccatgctgctgcagaacattgcgcagagcattgcatacaaccatcca
gactgcgtgctgatggttctgttgatcgacgaacgtccggaagaagtgaccgagatgcag
cgtctggttaagggcgaagttatcgcttcgacctttgatgaaccagcctctcgccacgtc
caggttgcggaaatggtgatcgagaaggccaagcgcctggttgagcacaaaaaagacgtg
atcatcttgcttgactccatcactcgcttggcgcgtgcctacaacaccgtagtaccggct
tccggtaaagtgttgaccggtggtgtggatgccaacgccctgcaccgtcctaagcgtttc
ttcggtgcggcacgtaacgttgaggaaggcggcagcctgaccatcatcgcgaccgcgctg
gttgataccgggtcgaaaatggacgaagttatttacgaagagtttaaaggtaccggcaac
atggaattacacctggcgcgtaaaatcgccgagaagcgtgtattccctgcgatcgactac
aaccgttctggtacacgtaaagaagaattacttaccacgtctgaagaactgcagaaaatg
tggatcctgcgtaaaatcattcacccaatgggtgagattgatgcgatggaattcctcatt
aacaagttggccatgaccaagaccaatgatgaattcttcgatatgatgaagcgctcataa
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