Serratia grimesii: SGBXF1_01273
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Entry
SGBXF1_01273 CDS
T09948
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sgri
Serratia grimesii
Pathway
sgri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGBXF1_01273 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgri03019
]
SGBXF1_01273 (rhlE)
Enzymes [BR:
sgri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SGBXF1_01273 (rhlE)
Messenger RNA biogenesis [BR:
sgri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SGBXF1_01273 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HI1480
UvrD-helicase
Shikimate_DH
Cas3-like_C_2
DUF6256
DUF5693
Motif
Other DBs
NCBI-ProteinID:
SMZ55649
LinkDB
All DBs
Position
1:1368682..1370043
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AA seq
453 aa
AA seq
DB search
MSFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSKHDHAVKGRRPVRALILTPTRELAAQIGENVESYSKYLRLRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQRAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMI
GEGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDPSIKAEPIINGRQGGGRGAPRGNGGGQRSGNGGGQRSGNGG
QRENRGGGSARPQGDGKPRSGAPSRRPRSRPAE
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaaaccctcggcttaagtgctgaaattctgcgcgctgttgaagaacagggc
tatcgcgaacctacgccaattcaacgccaggcgattcctgtcgtattggaaggtcgtgac
ctgatggccagcgcccagaccggtaccggtaaaaccgctggctttaccttgccgctgcta
cagctgctgagtaagcatgatcatgcggtcaaaggtcgccgtccggtacgtgcgttgatc
ctgacgcctacccgtgaactggctgcgcaaatcggcgaaaacgtcgaatcctacagcaaa
tacctgcgcctgcgttcgctggtggtatttggcggcgtgagcatcaacccgcagatgatg
aaactgcgtggcggtgttgatgttttggtggcaacaccaggccgtctgttggatctggaa
caccaacgtgcggttgacctgtccaaaattgaaattctggtgctggatgaagcggaccgc
atgctggatatgggctttatccatgatatccgtcgcgtgctggccaaactgcctgccaag
cgtcagaacctgctgttctctgcgaccttctctgacgacattaaagcattggctaacaag
ctgctgcacaacccagcgtcggttgaagtggcgcgtcgtaacaccgcgtccgagcagatc
gaacagagcgtgcacttcgttgataagaagcgtaagcgggaactgctgtctcagatgatc
ggtgaaggtgactggaagcaagtgttggtgttcaaccgcaccaagcacggcgctaaccac
ctggctgaacagttgaacaaagacggcatcactgctgcggcgatccacggcaataaaagc
cagggtgcccgtacccgtgcattggccgattttaaagatggcaaaatccgcgtattggtg
gctaccgacatcgcggcgcgtggtctggacatcgaccagttgccacacgtggtgaactac
gagttgcctaacgtgccggaagactatgtgcaccgcatcggccgtactggccgtgctgaa
cgtaccggtgaggctatctcactggtgtgtgtggatgagcacaaactgctgcgtgatatc
gagcgcctgctgaagcgtgaaatcccacgtattgccctgccaggctacgagccggatcca
agcatcaaggcggagccgatcatcaacggccgtcaggggggtgggcgtggcgctccacgc
ggcaacggcggcggtcaacgttccggtaacggcggtggccagcgcagtggcaatggcggc
cagcgtgaaaaccgcggtggcggcagcgcccgtccgcagggtgatggcaagccgcgttca
ggtgctccttcgcgccgtccgcgcagccgcccggctgagtaa
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