Serratia grimesii: SGBXF1_02028
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Entry
SGBXF1_02028 CDS
T09948
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgri
Serratia grimesii
Pathway
sgri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SGBXF1_02028 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgri03400
]
SGBXF1_02028 (mfd)
Enzymes [BR:
sgri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SGBXF1_02028 (mfd)
DNA repair and recombination proteins [BR:
sgri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SGBXF1_02028 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
SMZ56396
LinkDB
All DBs
Position
1:complement(2125470..2128952)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSISDNPKRSASSTTSRYSLPERAGDLRQLGQLTGSACAVECAEIIERHNGPVMLIAPDM
QNALRLRDEIQQFTDQMVTTLSDWETLPYDSFSPHQEIISARLSSLYHLPTMVRGVIILP
VNTLMQRVCPHEFLHGHALVMKKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALL
DLFPMGSEEPYRIDFFDDEIDSLRTFDVDNQRTLSEVDAINLLPAHEFPTDKNAIELFRS
QWREQFEVRRDAEHIYQQVSKGTWPAGIEYWQPLFFNQPLPSLFSYLPGNTLIVNTGNLE
SAAERFWLDVNQRYESRRVDPMRPLLSPDSLWLRVDTLFSELKAWPRMALKTEELPAKAG
NTNLDYRALPDLAVQAQQKAPLDNLRRFIESFDGSVIFSVESEGRRETLQDLLGRIKLGT
SLIQHLDQAEPAGRYMMVGASERGFLDGMRNRALICESDLLGERVSRRRQDNRRTINTDV
LIRNLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGEDKLYVPVSSLHLI
SRYAGGADENAPLHKLGGDAWSRARQKAAERVRDVAAELLDIYAQRAAKTGFAFKHNREQ
YQLFCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENG
KQVAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQVMDDAVDGKVDIIIG
THKLLQSELRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSG
MRDLSIIATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAEKL
AELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERAD
RFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAHKRLEAIASLEDLGAGFALATHD
LEIRGAGELLGEDQSGQMTTVGFSLYMELLESAVDALKHGREPSLEDLTSNQTEVELRMP
ALLPDDFIPDVNTRLSFYKRIASAKNDGELEELKVELIDRFGLLPDPARNLLQCAALRQH
AQKLGIKRIEGNERGGFIEFGEKNLVDPGYLIGLLQSNPQIYRLDGPTKLKFMLDLTDRQ
KRLKFTEELLTAFREHTLAA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgagcatctccgataaccctaagcgttctgcatcctcaacaacctcccgttattctttg
cctgagcgtgcaggcgatttgcgccagttggggcaactgaccggctcggcctgcgccgta
gagtgcgccgagatcatcgaacgacataacgggccggtgatgttgatcgccccggacatg
caaaatgcgctgcggctgcgcgacgaaatccagcagtttaccgatcaaatggtgacgaca
ctgtcagactgggaaaccctcccctacgacagcttctcgccacatcaggaaattatctcc
gcgcgtctgtcgagcctgtaccacctgccgaccatggtgcgcggcgtcattatcctgccg
gtcaataccctgatgcagcgtgtttgcccacacgagttcctgcacggccatgcgctggta
atgaaaaaaggccagcgcctgtcgcgcgacaaactgcgtgcccaactcgagcaagcgggc
taccgcagtgtcgatcaagtgatggagcacggtgagttcgccacccgcggcgcattgctt
gatctgtttccaatgggtagcgaagaaccctaccgcatcgatttcttcgacgatgaaatc
gacagtctgcgcacctttgatgtcgacaaccaacgcacactgagcgaagtcgacgccatc
aacctgctgccagcgcatgaattcccgaccgataaaaacgctatcgaactgttccgcagt
caatggcgtgaacagtttgaagtccgccgcgacgccgaacatatttatcaacaggtgagt
aaagggacctggccagccggtatcgaatattggcaacccctgttcttcaatcaaccgctg
ccatcgctgttcagctatctgccaggcaatacactgatcgtcaataccggcaatctggaa
agcgccgccgaacgtttctggctggacgttaaccaacgttacgagagccgccgcgtcgat
ccaatgcggccactgctgtcacctgacagtctgtggcttcgggtcgatacgctgtttagc
gaattgaaagcctggccgcgcatggcgctaaaaaccgaagagctgccagccaaagccggt
aacaccaatctggattaccgcgcattgcccgatctggccgtgcaggcgcagcaaaaagca
ccgctggataatctgcgccgctttattgaaagctttgacggcagcgttattttctcggtc
gaaagtgaaggccgccgtgaaacgttgcaagacctgctaggccgtatcaagctcggcacc
tcgttgatccaacatctcgatcaagccgagccagcaggccgttacatgatggtcggtgcc
tccgagcgcggtttcctcgatggtatgcgcaaccgggccctgatctgcgaaagcgatctg
ctcggcgaacgcgtcagccgccgtcgacaagacaaccgccgcaccattaataccgatgtt
ctgatccgcaacctggcggaactgcatcccggccagccggtagtgcatctggagcatggc
gtcgggcgctacgtgggtttaaccacgctggaagccggtggcatcaaggccgaatacttg
atcctgtcttatgccggtgaagacaagctgtatgtgccagtttcttcattacaccttatc
agccgttatgcgggaggcgcagacgaaaatgccccgctgcataaactgggtggtgatgcc
tggtcacgcgcacgacagaaagcggccgagcgggtacgggacgtggcggcagagctgctg
gatatctatgcccaacgcgctgccaaaaccggcttcgcgtttaaacataaccgtgagcaa
tatcagctgttctgtcagagcttcccgtttgaaaccacccccgatcaggaacaggcgatc
aacgccgtactgagcgacatgtgccaacccttagccatggacaggttggtgtgtggtgat
gtcggcttcggcaaaaccgaagtggcaatgcgcgccgcgtttctggctgttgaaaacggc
aaacaagttgcggtattggtgccgacaaccctgctggcgcagcagcattttgacaacttc
cgcgatcgcttcgcaacctggccaatccgcattgagatgatgtcacgcttccgcagcgct
aaagagcagcagcaagtgatggacgatgccgtcgatggtaaagttgacatcatcattggt
acccacaaattgctgcaaagcgaactgcgctggaaagatctggggctgttgatcgtcgac
gaagagcaccgcttcggtgttcgccataaagagcgtattaaagcaatgcgcgccgacgta
gatattctgacgctgactgccacacctatcccgcgtacgctgaacatggccatgagtggc
atgcgtgacctgtcaattatcgctaccccacctgcccgtcgcctggcagtaaaaaccttt
gtccgcgagtacgacagtttggtcgtgcgcgaagcaatcctgcgcgaagtattgcgtggg
ggtcaggtttactacctgtacaacgatgtagaaaacatcgaaaaagcagcagaaaaactg
gccgagttggtaccagaagcgcgtatcgctatcggtcacggccagatgcgtgaacgcgat
ctggaacgggtgatgaacgacttccaccaccagcgtttcaacgtgttggtctgtaccacc
attatcgaaaccggcatcgatatccccagcgccaataccattatcattgagcgggcggat
cgctttggtctcgcgcagttgcatcagctacgcggccgcgtcgggcgttcacaccatcaa
gcctacgcctatttgctgacgccgaatccgaaagcaatgagcaccgacgcccataaacgt
ctggaggccatcgcgtcgctggaagatttgggtgccggctttgcgttagccactcacgat
ctggagattcgtggcgcgggcgaactgctgggtgaagatcagagtggccagatgaccacc
gttggtttttcactgtatatggaactgttggaaagtgcagttgatgcgcttaagcacgga
cgtgagccgtcgctcgaagacctcaccagcaaccaaacggaagtggagctgcgtatgcct
gccctgctgccggatgatttcattcccgacgttaacacccgtctgtcgttctataaacgt
attgccagtgcgaaaaacgacggtgaattggaagaactgaaagtggagctgattgaccgc
ttcggtctgctgcccgatccagcacgtaacctgctgcaatgtgcggctctgcgtcaacat
gcccaaaaactgggcataaaacgcatagaaggcaatgaacgcggcgggtttattgagttt
ggcgagaagaacctggttgacccgggttatttgattggtctgctacagagtaatccacaa
atctatcgtctggatgggccaaccaagctgaaatttatgctggatttgaccgaccgccag
aaacgcctgaagtttaccgaggagttactgaccgcattccgcgagcatacgttggcagcc
tga
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