Serratia grimesii: SGBXF1_02138
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Entry
SGBXF1_02138 CDS
T09948
Symbol
kdgR_3
Name
(GenBank) Pectin degradation repressor protein KdgR
KO
K19333
IclR family transcriptional regulator, KDG regulon repressor
Organism
sgri
Serratia grimesii
Brite
KEGG Orthology (KO) [BR:
sgri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sgri03000
]
SGBXF1_02138 (kdgR_3)
Transcription factors [BR:
sgri03000
]
Prokaryotic type
Helix-turn-helix
IclR family
SGBXF1_02138 (kdgR_3)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
IclR_C
HTH_IclR
HTH_24
HVO_A0261_N
HTH_5
TrmB
HTH_11
HVO_A0114
MarR_2
HTH_45
Fe_dep_repress
Mga
MarR
FUR
HTH_34
PadR
Rrf2
HTH_6
Dimerisation2-like_dom
HTH_26
PF0610-like_N
Dimerisation
Motif
Other DBs
NCBI-ProteinID:
SMZ56506
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Position
1:2242564..2243427
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AA seq
287 aa
AA seq
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MVSEVPRILKLLFKFLKNRSWVGYMVNADPDKQPDAVSSVLKVFGILQALGEEREIGITE
LSQRVMMSKSTVYRFLQTMKSLGYVSQEDESEKYALTLKLFELGAKSLQSVDLIRSADVQ
MRELSHHTREAIHLGALDEDSIVYIHKIDAMYNLRMYSRIGRRNPLHSTAIGKVLLAWRD
RAEVAQILSQIEFTRSTPNTLTDATALLSLLDQVREQGVGEDIEEQEEGLRCIAVPVFDR
FGVVTAGLSISFPSIRYSEDARADYIQRLHTAARNISEQMGYHDYPF
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggtctctgaggtaccgcgtatactgaaactcttgttcaaatttcttaaaaacagaagc
tgggtaggatatatggttaacgcagatccagataagcaaccggatgccgtgtcatctgtg
ctaaaggtttttggtatcttgcaggcgctgggcgaggaacgcgagatcggcattactgag
ctttcccagcgggtgatgatgtccaaaagtaccgtctaccgttttttgcaaaccatgaag
tccttgggctatgtgtcgcaggaagacgagtcggaaaaatatgcgcttactctgaaactg
tttgaactgggcgccaagtcgttacagagcgttgatcttattcgcagcgctgatgtccaa
atgcgtgagttgtcgcatcacacccgtgaagccattcaccttggggcattggatgaagat
agcattgtctatatccataaaatcgacgccatgtataacttgcgtatgtactcgcgcatt
ggccggcgtaaccctctgcacagcaccgcaatcggtaaagtgctgctggcctggcgtgac
cgggcggaagtagcccaaatcctgtctcagattgaatttacccgcagtaccccgaacacc
ctgaccgacgccaccgcgctgctgtcgttgttggatcaggtgcgtgaacagggtgtgggt
gaagacatcgaagagcaagaagaagggctgcgctgtattgcggtgccggtatttgaccgc
tttggtgtggtcactgcgggtctgagcatttcgttcccttcaattcgttactccgaagac
gccagagcagattacatccaacgtctgcataccgccgcgcgtaacatttccgagcaaatg
ggttaccacgactacccattctga
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