Serratia grimesii: SGBXF1_02389
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Entry
SGBXF1_02389 CDS
T09948
Symbol
spoVD_2
Name
(GenBank) Stage V sporulation protein D
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
sgri
Serratia grimesii
Pathway
sgri00550
Peptidoglycan biosynthesis
sgri01100
Metabolic pathways
sgri01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
sgri00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SGBXF1_02389 (spoVD_2)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
SGBXF1_02389 (spoVD_2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sgri01011
]
SGBXF1_02389 (spoVD_2)
Enzymes [BR:
sgri01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
SGBXF1_02389 (spoVD_2)
Peptidoglycan biosynthesis and degradation proteins [BR:
sgri01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
SGBXF1_02389 (spoVD_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PBP_dimer_2
Motif
Other DBs
NCBI-ProteinID:
SMZ56754
LinkDB
All DBs
Position
1:2499187..2501112
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AA seq
641 aa
AA seq
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MALLKDKIRDHSAEEMLFIRRAGVAMVLVVACFGVLIANLYRLQVKQHAFYQTRSNQNDI
KMVPIAPSRGLIFDRNGIPLVRNITLYQIQIIPSKIDNMAALLQALTPIVDLTPEDITAF
RDDMHHNGRYKPVTLKTGLTETEVARFAVNQYRFDGVTIDTYQQREYPYGAELAHVVGYV
SKINDSDLKRLDKAGLSENYAADRNIGKQGIEAYYESELHGTTGYQEVEVDNHGRVIRLL
KEQPPQAGKNIYLTLDLSLQQYIESVLKGQRAAVVVEDPRDGGILAMVSSPSYDPNPFVK
GISYKAYKTLLTNPDLPLINRVTQGLYPPASTVKPYMATSALFAGVITPNTTFFGAPTWT
LPGTQRRYRDWLKSGHGMLNVTKAIEESADTFFYQVAFEMGIDRIHSWLSQFGYGQATGI
DLNEEYRGVLPSREWKQRVHKKPWYQGDTISVGIGQGYWVATPIQMVKALTTLINNGKVK
TPHLLYSMRQGNQVTRYLPPKQAAQVGDAKSPYWGIVRNGMYGMANLPNGTGYKLFHTAP
YQIAAKSGTSQVFGLKENQTYNAKMIPVRLRDHIFYTLFAPYKNPRVAMALILENGGGDG
VVAGPTARAILDHIFDPANAPQPNADQKVKPELNDSADVQQ
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggccctattaaaagataaaattcgtgaccattccgctgaggaaatgttgtttattcgc
cgtgctggcgtggcgatggtgttggttgtcgcctgttttggcgtgttgatcgcaaacctg
taccgcctacaggttaaacagcatgctttttaccaaacacgatccaatcagaacgacatt
aaaatggtgccgattgcgccgagtcgcgggctgatatttgaccgtaatggtatcccattg
gtgcgtaatattacgctgtaccagatccagattatccccagtaaaattgacaatatggct
gcactattgcaggcgttgacgccgattgtcgatctgacccccgaagatatcactgctttt
cgcgatgatatgcatcacaacggtcgctataaaccggtgacgctgaaaacgggcctgaca
gaaaccgaagtggcacgttttgcggtaaaccagtatcgctttgacggggtgaccattgat
acctatcagcagcgtgaatatccctacggggccgaattagcccatgtcgtgggctacgtc
tcgaaaatcaatgacagtgatttaaagcgattggataaagctggtttgagtgagaactat
gctgccgaccgcaatatcggtaagcagggcatcgaggcttactatgagtctgaactgcat
ggcacgaccgggtatcaagaagtggaagtggacaaccatggccgcgtgattcgcctgctg
aaggagcaaccgccacaggccggaaaaaatatctatctgacgctggatttgtctctgcaa
cagtacatcgagtcggtattgaaggggcagcgtgcggcggtggtggttgaagatccgcgc
gatggtggcattttggccatggtttccagccccagttacgatcccaatccttttgtgaaa
ggcatcagttataaagcctataaaacactgctgaccaacccagatttaccgcttattaac
cgcgtcacgcagggattgtacccaccggcctccaccgtgaaaccgtacatggcaacgtcg
gcgttgtttgctggtgttatcacccccaacaccactttttttggtgcgccgacctggaca
ctgccgggcacccagcgccgttatcgtgattggctcaagagcggacacggtatgttgaat
gtgaccaaggccattgaggaatctgccgacaccttcttctatcaggtggcgtttgaaatg
ggtattgaccgcatccacagttggctaagccaatttggttacggacaggcgacggggatc
gatctgaacgaagagtatcggggtgtgctgccaagtcgtgaatggaaacagcgggtgcat
aagaagccttggtaccaaggggacaccatatcggttgggattggtcaggggtattgggtt
gccacgcctatccagatggtgaaagcattaaccacgttgatcaataacggtaaggtgaaa
acgccccatttactgtattccatgcggcagggtaatcaggtaacgcgctatttgccaccg
aagcaggcggcacaggtaggtgatgccaaatcgccgtattggggcatcgtacgcaatggg
atgtatggtatggccaacctgccgaacggtaccggctataagcttttccatacagcaccg
taccagattgccgccaagtccgggacttcacaggtattcggtttgaaagaaaatcagact
tataacgccaaaatgatcccggtgcggttacgtgatcatattttctataccttgtttgcc
ccttataaaaatccacgagtggcaatggcgctgattctggaaaatggcgggggtgatggt
gtggtggcagggccaaccgcgcgggcgattctcgaccatatttttgacccggctaacgcg
ccgcagcctaacgcggaccagaaagttaaaccggagttaaacgacagcgcggatgtgcaa
cagtaa
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