Serratia grimesii: SGBXF1_02627
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Entry
SGBXF1_02627 CDS
T09948
Symbol
hrpB_1
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sgri
Serratia grimesii
Brite
KEGG Orthology (KO) [BR:
sgri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgri03019
]
SGBXF1_02627 (hrpB_1)
Enzymes [BR:
sgri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SGBXF1_02627 (hrpB_1)
Messenger RNA biogenesis [BR:
sgri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SGBXF1_02627 (hrpB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
T2SSE
NACHT
nSTAND3
nSTAND_NTPase5
PhoH
AAA_16
SLFN-g3_helicase
HCNGP
Motif
Other DBs
NCBI-ProteinID:
SMZ56992
LinkDB
All DBs
Position
1:complement(2770818..2774705)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLAALSAQLGELMLRDQQRLQRRLQGARKIKNPEAQLTAAVEIESDIATALRKVQSR
AATCPKITYPENLPVSQKKQDILQAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGL
IGHTQPRRLAARTVANRIADELETPLGGSVGYKVRFNDQVGENTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVEVRYRPVVDDADDTDRDQLQAIFDAVDELGREGPGDILIFMSGEREIR
DTADALNRLNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSDGICIRLYAEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNILDGVRLLEELGAIKTAENGHYQ
LTPQGRQLAQLPIDPRLARMVLEAQKSGSVREVMIITAALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAYVNLWDWLKEQQKEHSSSQFRRLCRNDFLNYLRVREWQDIYTQLRQVV
KELGLPVNSEPSDYRSVHTALLTGLLSHIGQKDADKQEFTGARNARFSIFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLVKHSYSEPHWSKSQGAVMASEKVTLF
GLPIVAARAVNYSTIDPLLCRELFIRHALVEGDWQTRHAFFSANLKLRAEVEELEHKSRR
RDILVDDETLFNFYDQRIPNDVVSGRHFDNWWKNASKQNADLLSFEKEMLIKDGANQVSA
LDYPNTWYQGNLKLRLTYQFEPGTDADGVTVHIPLPILNQVEEKGFEWQIPGVRRELVIA
LIKSLPKPVRRNFVPAPNYAEAFLGRVTALELPLLDALERELRRMTGVTVSREDWQWDQV
PDHLKMTFRVVGEKHKTLLEGKDLTALKLQLKDKVQETLSAVADDGLEQSNLHIWSFGTL
PAFYEQKRGGYSMKAYPALVDEKDSVAIRLFDSEQEQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCISCGIDKLIAEHGGPVWQEENFARLQELVRGEL
NETVVGVAKQVEQILTAVFNINKRLKGRVDISLALALSDIKAQLGGLVYRGFVTNNGWKR
LPDTLRYLQAIERRLEKLAIDPHRDRAQMIRVEQVQQAWQQWLNKLPPKRQQDDEVKEVR
WMIEELRVSLFAQQLGTPYPISDKRILQTIEQLSG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatctccgctcgcggcattgtctgcccaactgggcgagctgatgctccgtgatcaa
caacgcctgcaacgtcggctgcagggcgcacgaaaaatcaaaaatcccgaagctcagttg
acagcggctgttgaaatcgaaagtgacatagccactgcgctgcgtaaagtgcagtctcgt
gcggcgacatgcccaaaaatcacttacccggaaaacctgcccgtcagccagaaaaagcag
gatattctgcaggccatccgcgaccatcaagtggtgattgtcgccggtgaaaccggctcg
gggaaaaccacccagttaccgaagatctgcctggagttagggcgtggggtgaaggggctg
attggccatactcagccacgacgtttggcagcacgtactgtcgcaaaccgtattgccgac
gagctggaaacgccgttgggcgggagcgtcggttataaggtgcgctttaacgatcaggta
ggggaaaataccctggtcaagctgatgaccgacggtatcctgctggctgaaatccaacag
gatcggctgctgatgcagtacgatacgctgatcatcgatgaggcgcatgaacgtagcctg
aacatcgacttcatcctcggttacttgcgtgagttgttgccaaagcgcccagatcttaaa
gtgatcatcacctcggcgactatcgatccacagcgattttcgcgtcattttaataacgca
ccaattatcgaagtctccgggcgtacgtatccggtggaggtgcgttatcgtcctgtcgtg
gatgatgcagatgataccgatcgcgatcaactgcaggcgattttcgatgcggtggatgag
ctcggccgcgaaggaccgggggatatcctgatctttatgagcggtgagcgcgaaatccgc
gatactgccgacgcgctgaaccgcctgaatctgccacacactgaagtcttgcccctgtat
gctcgcctgtcgaacagcgaacagaaccgagtcttccagtcgcaccatggtcggcgtatt
gtgctggcgaccaacgtggcagaaacctcactgactgtcccgggtatcaagtacgtcatt
gacccgggcacagcacgtatcagccgctacagtttccgtactaaggtgcagcgtctgccg
atcgaaccggtgtcgcaagcctcggccaaccaacgtaagggccgttgtggccgcgtatcg
gacggtatttgtattcgcctgtatgcggaacaagacttcctgtcacggcctgagtttacc
gatccagaaattctacgtaccaacctggcgtcagtcatcttgcagatgacctcactcggg
ttgggcgacatcgcggccttcccgttcgtagaagcaccggataagcgcaatattctggat
ggcgtgcgcctgctggaagaactgggggcgattaaaacagcggaaaatggccattaccag
ctcacgccgcaagggcgtcaattggcgcagttacccattgatccacggttagcccgtatg
gtgctggaggcacaaaagagtggcagcgtgcgcgaggtgatgatcatcaccgcggcgttg
tcgatccaggatccgcgtgaacgtccaatggacaaacagcaggcgtcggatgaaaagcat
cgccgtttcgctgataaagactccgacttcctggcctacgttaatctgtgggactggctg
aaagagcagcaaaaagaacactcttccagccagttccgccggctgtgtcgcaatgacttc
ctgaactaccttcgggtacgtgaatggcaagatatttacacccaattgcgtcaggtggtg
aaagagttggggctgccggtcaacagtgagccttctgattatcgcagcgtgcataccgcg
ctgttgactggcttgctatcacacatcggccagaaagatgctgacaaacaggagttcacc
ggcgcccgcaacgcacgtttctcgatcttccctggctcaggcctgttcaagaaaccaccg
aagtggaccatggtggctgagctggtggaaaccagccgcctgtggggacgtattgccgcg
cggatcgagcctgagtggatagaaccgctggctcagcatttggtgaagcacagttacagc
gaaccgcactggtcgaaatcccagggcgcggtgatggccagtgaaaaagtgacgctgttc
ggcttgccgattgtcgctgcgcgcgcggtcaactacagcaccattgatcctttattgtgc
cgcgaattgtttatccgccatgcactggtagagggcgactggcaaacgcgacatgcgttc
tttagtgccaacctcaagttgcgagccgaagtcgaagagctggaacacaaatcgcgtcgc
cgcgacattctggtggatgacgagaccctgttcaacttctatgaccagcgcatcccgaat
gatgtggtgtccggacgccattttgacaattggtggaaaaacgccagtaagcagaatgcg
gatctgctcagctttgaaaaagagatgttgatcaaggacggtgccaatcaggtcagcgcg
ctggattatccgaacacgtggtatcaaggcaatctcaaattacgtctgacgtaccaattt
gaaccgggcaccgacgccgacggcgttacggtacatattccgttgccaattcttaatcag
gtagaagaaaagggctttgaatggcaaattccgggtgttcgccgtgaactggtgattgcc
ttgattaagtcgttaccaaaacccgtgcgccgcaactttgtaccggcgcccaattacgcc
gaagccttccttgggcgagtaactgcgctggaattgccgttgcttgatgcgttggagcgc
gaactgcgtcgcatgacaggcgtgacggtgtcacgtgaagattggcaatgggatcaggtg
cccgatcaccttaagatgacgttccgggttgtgggtgaaaaacacaaaaccctgcttgaa
ggtaaagatctgacggcacttaaattgcaattgaaagacaaggtgcaggaaacgctatct
gcggtggcggacgatgggttggaacaaagcaatctgcatatttggagttttggcacactg
ccggcgttttatgagcagaaacgcggcggttattcgatgaaagcttatccggcactggtg
gacgaaaaagatagcgtagcaatccgtctgttcgacagcgaacaagagcagcaacaagca
atgtggcaaggtacgcgccgcttactgttactgaatattccttcgccaatcaaatatctg
catgaaaaactgcctaacaaagccaagttggggctgtacttcaacccttacggcaaagtg
ttggatttgatcgacgactgcatttcatgtggcatcgacaaattgatcgcagaacatggc
gggccggtgtggcaagaggaaaacttcgcccgcttgcaggaattggtgcgcggtgagttg
aatgaaacagtagttggggtcgccaaacaagttgaacaaatcctgactgcggtgtttaac
atcaacaaacggttgaaaggccgggtggatatatcgttggcactggcgctgtcggatatc
aaagcccagcttggtggcttggtgtatcgcggttttgtgaccaacaacggttggaagcgt
ttgccggatacgctgcggtatctgcaggcgattgaacgtcgtctggagaagctggctatc
gatccacaccgcgatcgtgcacagatgatacgggtggagcaggtgcagcaggcttggcaa
cagtggctgaataagctgccgccgaagcgacagcaggatgatgaggtaaaagaggtgcgc
tggatgatagaagagctgcgcgtgagcttgttcgctcagcaattgggtacgccttatcct
atctcggacaagcgtatcttgcagactatcgagcagctttcaggctaa
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