Serratia grimesii: SGBXF1_02687
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Entry
SGBXF1_02687 CDS
T09948
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sgri
Serratia grimesii
Brite
KEGG Orthology (KO) [BR:
sgri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgri03016
]
SGBXF1_02687 (rnb)
Enzymes [BR:
sgri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SGBXF1_02687 (rnb)
Transfer RNA biogenesis [BR:
sgri03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SGBXF1_02687 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
SMZ57052
LinkDB
All DBs
Position
1:2832226..2834160
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRV
TATLHTEKEREIAEPETLIEPFLTRFVGRVQKRDDRLSIVPDHPLLKDAIQCRPVRGLNH
NFQAGDWAVAEMCRHPLKGDRGFNADLTRFITDGEDHLAPWWVTLARHNLEKEAPEMIAI
SEPDASLPREDLTALNFVTIDSASTEDMDDALFVQDNGDGTLQLTIAIADPTAYVEQGSE
LDEIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNQRRHVLACRVTIGTDGALAADMRF
FAAEIESKAKLVYDEVSDWLEGIAGWQPPSDDIAQQITLLKRVCDARNAWRHQHALVFKD
RPDYRFVLGEKGEVLEIITEQRRSANRIVEECMIASNVCAAIVLRDHLGFGIYNVHTGFD
PLLVEQAVTVLQANGVEAEAEKLLTLDGFCELRRHLDAQPTQFLDSRIRRSQTYAEISTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITGQAAEKPQDEVTVQLAERRRLNRM
AERDVGDWLYARYLKDKAGTDERFNAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MVCSQETGTVQIKGEVVYRQGDSLQVTIAEVRMETRSVIARPAV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcagaccccg
cgtgttgaaggcgtagtaaaagggactgagaaaggctttggctttcttgaagtagacggt
caaaaaagctatttcattccaccaccgtacatgaaaaaagttatgcacggtgaccgagtg
accgcaacgctgcataccgaaaaagaacgcgaaatcgccgagccagaaaccctgatcgag
ccattcctgacgcgctttgtcggtcgtgtgcaaaagcgcgatgaccgtttgtccatcgtg
cctgatcatccgttgctgaaagacgcaattcagtgtcgcccagtgcgtggtttgaaccac
aacttccaggctggcgattgggctgtcgcagaaatgtgccgccacccgctgaaaggagat
cgcggcttcaacgccgatctgacccgtttcattactgatggcgaagatcacctggcgccg
tggtgggttactctcgcccgccacaatctggaaaaagaagccccggaaatgatcgctatc
agcgagccggatgcctctttgccacgtgaagatctgaccgcgttgaattttgtcactatt
gacagcgccagcaccgaagatatggacgatgcgttgtttgtgcaggacaacggtgacggt
acactgcagttgaccatcgccattgccgatccgacggcgtacgtcgaacaaggcagcgaa
ctggatgaaatcgcccgcaagcgcgccttcaccaactatctgccgggcttcaacatccct
atgttgccgcgcgacctgtcagacaacctgtgttcactgcgccctaaccagcgccgccac
gtgctggcttgccgcgttaccatcggtaccgacggcgcattggcggctgacatgcgcttc
tttgccgctgagatcgaatctaaagccaagctggtttatgacgaagtctctgactggctg
gaaggcattgccggttggcagccaccgagtgacgatattgcacaacaaatcactctactc
aagcgtgtgtgcgatgcccgtaacgcatggcgccaccagcatgcgctggtgtttaaagat
cgcccagactaccgctttgtgttgggcgagaaaggcgaagtgttggagatcatcactgaa
caacgccgtagcgccaaccgtatcgttgaagagtgcatgatcgcttccaacgtctgtgcc
gccatcgtgctgcgcgaccatttgggctttggcatttacaacgtgcataccggtttcgat
ccgctgctggttgagcaagcggttaccgtactgcaggccaacggggtcgaagccgaagcc
gaaaaactgctgacgctggacgggttctgtgaactgcgtcgtcacctggatgcacagccg
acccaattcctcgacagccgtatccgccgttctcagacgtatgccgaaatcagcacgacg
ccggggccgcatttcggcctgggactggaagcctacgcgacctggacttctccgatccgt
aaatacggcgacatggtcaaccaccgtctgctcaaagcggttatcaccggccaggcagcc
gaaaaaccgcaagacgaagtgacagtccaattggcagaacgtcgtcgtctgaaccgcatg
gcggaacgtgacgtgggtgactggctgtatgcgcgttacctgaaagacaaagccggcacc
gatgagcgcttcaatgcagaaatcatcgacgtgactcgcggcggcctgcgggtgcgcttg
ctggacaatggcgcagtggccttcatcccagcaccctttattcacgcggtacgtgatgaa
atggtctgcagccaggaaaccggcacggtccaaatcaaaggtgaagtcgtctatcgacaa
ggtgacagcctgcaagtcaccatcgccgaagtgcgtatggaaacccgcagcgtgatcgcc
agaccggcggtataa
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